YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229354000, gi...
Organism:	Vibrio cholerae B33
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229354000, gi....

Description	E-value	Query Range	Subject Range
gi\|91708476, gi\|... - gi\|91774489\|ref\|YP_544245.1\| hypothetical protein Mfla_0133 [Methylobacillus flagellatus KT], gi\|917...	174.0	[0..1]	[88..20]
FETP_ACIET - Probable Fe(2+)-trafficking protein OS=Acidovorax ebreus (strain TPSY) GN=Dtpsy_1924 PE=3 SV=1 FETP_ACISJ - Probable Fe(2+)-trafficking protein OS=Acidovorax sp. (strain JS42) GN=Ajs_1798 PE=3 SV=1	174.0	[0..1]	[89..1]
FETP_RHOFT - Probable Fe(2+)-trafficking protein OS=Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T...	172.0	[0..1]	[89..1]
YQ27_VIBPA, FETP... - (Q87LI5) Hypothetical UPF0269 protein VP2627, Probable Fe(2+)-trafficking protein OS=Vibrio parahaem... FETP_VIBPA - Probable Fe(2+)-trafficking protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) ...	170.0	[0..1]	[90..1]
FETP_VEREI - Probable Fe(2+)-trafficking protein OS=Verminephrobacter eiseniae (strain EF01-2) GN=Veis_1222 PE=3 ...	169.0	[0..1]	[89..1]
gi\|84375297, gi\|... - gi\|84394055\|ref\|ZP_00992791.1\| hypothetical protein V12B01_07720 [Vibrio splendidus 12B01], gi\|84375...	169.0	[0..1]	[90..1]
gi\|75855112, gi\|... - gi\|75855112\|ref\|ZP_00762773.1\| COG2924: Fe-S cluster protector protein [Vibrio sp. Ex25], gi\|1161844... gi\|91228698, gi\|... - gi\|91228698\|ref\|ZP_01262612.1\| hypothetical protein V12G01_14084 [Vibrio alginolyticus 12G01], gi\|91...	169.0	[0..1]	[90..1]
FETP_PHOPR - Probable Fe(2+)-trafficking protein OS=Photobacterium profundum GN=PBPRA3155 PE=3 SV=1 gi\|90327007, gi\|... - gi\|90412029\|ref\|ZP_01220036.1\| hypothetical protein P3TCK_24626 [Photobacterium profundum 3TCK], gi\|... FETP_PHOPR - Probable Fe(2+)-trafficking protein OS=Photobacterium profundum (strain SS9) GN=PBPRA3155 PE=3 SV=1	169.0	[0..1]	[90..1]
FETP_VIBVU - Probable Fe(2+)-trafficking protein OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1514 PE=3 SV=1 YF14_VIBVU, FETP... - (Q8DCC5) Hypothetical UPF0269 protein VV11514, Probable Fe(2+)-trafficking protein OS=Vibrio vulnifi... FETP_VIBVY - Probable Fe(2+)-trafficking protein OS=Vibrio vulnificus (strain YJ016) GN=VV2885 PE=3 SV=1	169.0	[0..1]	[90..1]
gi\|42630406 - gi\|42630406\|ref\|ZP_00155950.1\| COG2924: Fe-S cluster protector protein [Haemophilus influenzae R2846... gi\|46133120 - gi\|46133120\|ref\|ZP_00203081.1\| COG2924: Fe-S cluster protector protein [Haemophilus influenzae R2866... FETP_HAEI8 - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0920 PE=3 SV=... FETP_HAEIN - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... gi\|145267995, gi... - gi\|145634829\|ref\|ZP_01790537.1\| hypothetical protein CGSHiAA_04473 [Haemophilus influenzae PittAA], ... gi\|145632113, gi... - gi\|145632113\|ref\|ZP_01787848.1\| hypothetical protein CGSHi3655_06659 [Haemophilus influenzae 3655], ... gi\|145630504 - gi\|145630504\|ref\|ZP_01786284.1\| hypothetical protein CGSHi22421_04513 [Haemophilus influenzae 22.4-2... gi\|145628355, gi... - gi\|145628355\|ref\|ZP_01784156.1\| hypothetical protein CGSHi22121_04920 [Haemophilus influenzae 22.1-2... FETP_HAEIN, Y760... - (P44048) UPF0269 protein HI0760, Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae GN=HI... gi\|229812342, gi... - gi\|229844628\|ref\|ZP_04464767.1\| hypothetical protein CGSHi6P18H1_03429 [Haemophilus influenzae 6P18H... gi\|229810810, gi... - gi\|229845806\|ref\|ZP_04465918.1\| hypothetical protein CGSHi7P49H1_03128 [Haemophilus influenzae 7P49H... gi\|144983894 - gi\|144983894\|gb\|EDJ91336.1\| hypothetical protein CGSHi22421_04513 [Haemophilus influenzae R3021] FETP_HAEIG - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain PittGG) GN=CGSHiGG_07295 PE=3 ... gi\|145270210, gi... - gi\|145636684\|ref\|ZP_01792351.1\| hypothetical protein CGSHiHH_03748 [Haemophilus influenzae PittHH], ...	169.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTVFCTRL QKEADGLDFQ LYPGELGKRI FDNICKEAWA QWQTKQTMLI NEKKLNMMDP  60
   61 EHRKLLEQEM VNFLFEGKEV HIEGYTPPAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	1xs8A
Description:	Solution Structure of YGGX protein of salmonella enterica
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits