YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124502171, gi...
Organism:	Escherichia coli B
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124502171, gi....

Description	E-value	Query Range	Subject Range
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	211.0	[0..1]	[242..12]
gi\|187427731, gi... - gi\|75178922\|ref\|ZP_00698958.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella boy... gi\|75187837, gi\|... - gi\|75187837\|ref\|ZP_00701104.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75239402, gi\|... - gi\|75239402\|ref\|ZP_00723373.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|190907173, gi... - gi\|75240525\|ref\|ZP_00724453.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75212340, gi\|... - gi\|75212340\|ref\|ZP_00712364.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75229298, gi\|... - gi\|75229298\|ref\|ZP_00715857.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|24114323, gi\|... - gi\|24114323\|ref\|NP_708833.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 2a st... gi\|25347003, gi\|... - pir\|\|F91116 1-acyl-sn-glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O15... gi\|91074010, gi\|... - gi\|91212436\|ref\|YP_542422.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli UTI89]... gi\|30042628, gi\|... - gi\|30064371\|ref\|NP_838542.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 2a st... gi\|13363374, gi\|... - gi\|15833156\|ref\|NP_311929.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|26249589, gi\|... - gi\|26249589\|ref\|NP_755629.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli CFT073... gi\|110643261, gi... - gi\|110643261\|ref\|YP_670991.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli 536],... gi\|12517587, gi\|... - gi\|15803562\|ref\|NP_289595.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|13363374, gi\|... - gi\|15833156\|ref\|NP_311929.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|110806915, gi... - gi\|110806915\|ref\|YP_690435.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 5 st... gi\|227887729, gi... - gi\|227887729\|ref\|ZP_04005534.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli 839... gi\|168747475, gi... - gi\|188017834\|gb\|EDU55956.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|226899270, gi... - gi\|237706230\|ref\|ZP_04536711.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Escherichia sp. 3_2_53F... gi\|251786297, gi... - gi\|251786297\|ref\|YP_003000601.1\| hypothetical protein B21_02840 [Escherichia coli BL21], gi\|24237857... gi\|168760176, gi... - gi\|189369340\|gb\|EDU87756.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|253979024, gi... - gi\|254289717\|ref\|YP_003055465.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli BL... gi\|168753985, gi... - gi\|189358658\|gb\|EDU77077.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|254162967, gi... - gi\|254162967\|ref\|YP_003046075.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli B ... gi\|187770791, gi... - gi\|187770791\|gb\|EDU34635.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|254594372, gi... - gi\|254794972\|ref\|YP_003079809.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1... gi\|168767038, gi... - gi\|189363644\|gb\|EDU82063.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|189373863, gi... - gi\|189373863\|gb\|EDU92279.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|189000524, gi... - gi\|189000524\|gb\|EDU69510.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|115514450, gi... - gi\|117625326\|ref\|YP_854528.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli APEC ... gi\|217327667, gi... - gi\|217327667\|ref\|ZP_03443750.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|215266420, gi... - gi\|215488348\|ref\|YP_002330779.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1... gi\|218560097, gi... - gi\|218560097\|ref\|YP_002393010.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli S8... gi\|218362358, gi... - gi\|218555590\|ref\|YP_002388503.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli IA... gi\|218371775, gi... - gi\|218701789\|ref\|YP_002409418.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli IA... gi\|218428880, gi... - gi\|218691316\|ref\|YP_002399528.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli ED... gi\|73857037, gi\|... - gi\|74313560\|ref\|YP_311979.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella sonnei Ss046],... gi\|170681677, gi... - gi\|170681677\|ref\|YP_001745288.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli SM... gi\|81246690, gi\|... - gi\|82545279\|ref\|YP_409226.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella boydii Sb227],... gi\|168797607, gi... - gi\|189379610\|gb\|EDU98026.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|193061980, gi... - gi\|75259960\|ref\|ZP_00731238.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|208728399, gi... - gi\|208808598\|ref\|ZP_03250935.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|75515188, gi\|... - gi\|75515188\|ref\|ZP_00737372.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|195937162 - gi\|195937162\|ref\|ZP_03082544.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|208739014, gi... - gi\|208818891\|ref\|ZP_03259211.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|208812139, gi... - gi\|208812139\|ref\|ZP_03253468.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|209913751, gi... - gi\|209920492\|ref\|YP_002294576.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli SE... gi\|209159802, gi... - gi\|209398402\|ref\|YP_002272494.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1...	208.0	[0..1]	[245..1]
gi\|82778370, gi\|... - gi\|82778370\|ref\|YP_404719.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella dysenteriae Sd...	208.0	[0..1]	[245..1]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	207.0	[0..1]	[244..1]
lcl\|NC_016856.1_... - [gene=plsC] [protein=1-acyl-sn-glycerol-3-phosphate acyltransferase] [protein_id=YP_005239344.1] [lo... gi\|56129371, gi\|... - gi\|56415114\|ref\|YP_152189.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp.... gi\|62129320, gi\|... - gi\|62181687\|ref\|YP_218104.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|197364043, gi... - gi\|197364043\|ref\|YP_002143680.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|198243407, gi... - gi\|198243407\|ref\|YP_002217151.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|200389185, gi... - gi\|200389185\|ref\|ZP_03215797.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|205354090, gi... - gi\|205354090\|ref\|YP_002227891.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|194445505, gi... - gi\|194445505\|ref\|YP_002042438.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|194469762, gi... - gi\|194469762\|ref\|ZP_03075746.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|197212330, gi... - gi\|197248627\|ref\|YP_002148100.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|197265169, gi... - gi\|197265169\|ref\|ZP_03165243.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|205331130, gi... - gi\|205331130\|gb\|EDZ17894.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|205333919, gi... - gi\|205333919\|gb\|EDZ20683.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|205348380, gi... - gi\|205348380\|gb\|EDZ35011.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|168819765, gi... - gi\|205343444\|gb\|EDZ30208.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium GN=plsC PE=3 SV=1 gi\|161365525, gi... - gi\|161616161\|ref\|YP_001590126.1\| hypothetical protein SPAB_03963 [Salmonella enterica subsp. enteric... gi\|213982569 - gi\|213982569\|ref\|ZP_03409828.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|214001851 - gi\|214001851\|ref\|ZP_03412586.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|224584973, gi... - gi\|224584973\|ref\|YP_002638772.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|207858432, gi... - gi\|207858432\|ref\|YP_002245083.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|213618677 - gi\|213618677\|ref\|ZP_03372503.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|213647439 - gi\|213647439\|ref\|ZP_03377492.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|213859684 - gi\|213859684\|ref\|ZP_03385388.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium GN=plsC PE=3 SV=1 gi\|238909974 - gi\|238909974\|ref\|ZP_04653811.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... PLSC_SALTI - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhi GN=plsC PE=3 SV=1 PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... PLSC_SALTI - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhi GN=plsC PE=3 SV=1 gi\|29143436, gi\|... - gi\|29143436\|ref\|NP_806778.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp.... gi\|16761949 - gi\|16761949\|ref\|NP_457566.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp....	207.0	[0..1]	[245..1]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	205.0	[0..1]	[241..1]
gi\|116219659, gi... - gi\|75819123\|ref\|ZP_00749220.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole...	203.0	[0..1]	[243..1]
gi\|75827771 - gi\|75827771\|ref\|ZP_00757206.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229354934, gi... - gi\|229507429\|ref\|ZP_04396934.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae BX 3... gi\|116189455, gi... - gi\|75830552\|ref\|ZP_00759828.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75815119 - gi\|75815119\|ref\|ZP_00745644.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75824174, gi\|... - gi\|75824174\|ref\|ZP_00753637.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229338077, gi... - gi\|229524496\|ref\|ZP_04413901.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae bv. ... gi\|229516771, gi... - gi\|229516771\|ref\|ZP_04406217.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae RC9]... gi\|229513439, gi... - gi\|229513439\|ref\|ZP_04402903.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae TMA ... gi\|229353120, gi... - gi\|229509646\|ref\|ZP_04399127.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae B33]... gi\|229369591, gi... - gi\|229606936\|ref\|YP_002877584.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae MJ-... gi\|229335184, gi... - gi\|229527552\|ref\|ZP_04416944.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae 1212... tr\|A0A085QC14\|A0... - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Vibrio cholerae GN=DN30_1636 PE=3 SV=1	201.0	[0..1]	[243..1]
gi\|12720314, gi\|... - gi\|15601968\|ref\|NP_245040.1\| hypothetical protein PM0103 [Pasteurella multocida subsp. multocida str...	201.0	[0..1]	[238..1]
gi\|84377500, gi\|... - gi\|84387655\|ref\|ZP_00990672.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B...	201.0	[0..1]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIFRLIIT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPTD  60
   61 AESYGNAIYI ANHQNNYDMV TASNIVQPPT VTVGKKSLLW IPFFGQLYWL TGNLLIDRNN 120
  121 RTKAHGTIAE VVNHFKKRRI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIIPVCVS 180
  181 TTSNKINLNR LHNGLVIVEM LPPIDVSQYG KDQVRELAAH CRSIMEQKIA ELDKEVAERE 240
  241 AAGKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.221849
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits