YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124501887, gi...
Organism:	Escherichia coli B
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124501887, gi....

Description	E-value	Query Range	Subject Range
RHMD_SALCH, RHAM... - L-rhamnonate dehydratase OS=Salmonella choleraesuis GN=rhmD PE=3 SV=2, L-rhamnonate dehydratase OS=S... RHAMD_SALTI - L-rhamnonate dehydratase OS=Salmonella typhi GN=yfaW PE=3 SV=1 RHMD_SALPB - L-rhamnonate dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rhmD PE=3 SV=2 RHAMD_SALPB - L-rhamnonate dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfaW PE=3 SV=2 gi\|16761217 - gi\|16761217\|ref\|NP_456834.1\| putative MR-MLE-family protein [Salmonella enterica subsp. enterica ser... RHAMD_SALCH - L-rhamnonate dehydratase OS=Salmonella choleraesuis GN=yfaW PE=3 SV=2 RHMD_SALG2 - L-rhamnonate dehydratase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rhmD PE=3 SV=1 RHMD_SALTI - L-rhamnonate dehydratase OS=Salmonella typhi GN=rhmD PE=3 SV=1 RHMD_SALEP - L-rhamnonate dehydratase OS=Salmonella enteritidis PT4 (strain P125109) GN=rhmD PE=3 SV=1 gi\|29141087, gi\|... - gi\|29141087\|ref\|NP_804429.1\| putative MR-MLE-family protein [Salmonella enterica subsp. enterica ser... RHMD_SALCH - L-rhamnonate dehydratase OS=Salmonella choleraesuis (strain SC-B67) GN=rhmD PE=3 SV=2	316.0	[0..1]	[405..1]
RHMD_ECOL5 - L-rhamnonate dehydratase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhmD PE=3 SV=1 gi\|75243062 - gi\|75243062\|ref\|ZP_00726768.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol...	316.0	[0..1]	[405..1]
RHMD_SALPK - L-rhamnonate dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=rhmD PE=3 SV=1 RHMD_SALPA - L-rhamnonate dehydratase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rhmD PE=3 SV=1 RHMD_SALPA, RHAM... - L-rhamnonate dehydratase OS=Salmonella paratyphi A GN=rhmD PE=3 SV=1, L-rhamnonate dehydratase OS=Sa...	315.0	[0..1]	[405..1]
RHMD_SHIBS - L-rhamnonate dehydratase OS=Shigella boydii serotype 4 (strain Sb227) GN=rhmD PE=3 SV=1	315.0	[0..1]	[405..1]
RHMD_ECOHS - L-rhamnonate dehydratase OS=Escherichia coli O9:H4 (strain HS) GN=rhmD PE=3 SV=1	315.0	[0..1]	[405..1]
RHMD_ECOL6 - L-rhamnonate dehydratase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rhmD PE=3... gi\|227835656, gi... - gi\|227887306\|ref\|ZP_04005111.1\| L-rhamnonate dehydratase [Escherichia coli 83972], gi\|227835656\|gb\|E... RHMD_ECOL6, RHAM... - L-rhamnonate dehydratase OS=Escherichia coli O6 GN=rhmD PE=3 SV=1, L-rhamnonate dehydratase OS=Esche...	314.0	[0..1]	[405..1]
RHAMD_SALTY - L-rhamnonate dehydratase OS=Salmonella typhimurium GN=yfaW PE=1 SV=1 RHMD_SALTY, RHAM... - L-rhamnonate dehydratase OS=Salmonella typhimurium GN=rhmD PE=1 SV=1, L-rhamnonate dehydratase OS=Sa... RHMD_SALTY - L-rhamnonate dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rhmD PE=...	313.0	[0..1]	[405..1]
gi\|254794142, gi... - gi\|254794142\|ref\|YP_003078979.1\| predicted enolase [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|209765432, gi... - pir\|\|F85864 probable racemase Z3505 [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|15802796, gi\|... - gi\|15802796\|ref\|NP_288823.1\| putative racemase [Escherichia coli O157:H7 EDL933], gi\|12516590\|gb\|AAG... RHMD_ECO57 - L-rhamnonate dehydratase OS=Escherichia coli O157:H7 GN=rhmD PE=3 SV=1 gi\|13362605, gi\|... - gi\|15832389\|ref\|NP_311162.1\| putative racemase [Escherichia coli O157:H7 str. Sakai], gi\|13362605\|db...	312.0	[0..1]	[405..1]
RHMD_ECOUT - L-rhamnonate dehydratase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhmD PE=3 SV=1 gi\|226901091, gi... - gi\|237704725\|ref\|ZP_04535206.1\| L-rhamnonate dehydratase [Escherichia sp. 3_2_53FAA], gi\|226901091\|g... RHMD_ECOK1 - L-rhamnonate dehydratase OS=Escherichia coli O1:K1 / APEC GN=rhmD PE=3 SV=1 RHMD_ECO45 - L-rhamnonate dehydratase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhmD PE=3 SV=1	312.0	[0..1]	[405..1]
gi\|109158025\|pdb... - Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From Salmonella Typhimurium, Chain A, Crystal... gi\|109158025, gi... - gi\|109158025\|pdb\|2GSH\|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From Salmonella Typhi...	311.0	[0..1]	[405..2]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENIMTLPKI KQVRAWFTGG ATAEKGAGGG DYHDQGANHW IDDHIATPMS KYRDYEQSRQ  60
   61 SFGINVLGTL VVEVEAENGQ TGFAVSTAGE MGCFIVEKHL NRFIEGKCVS DIKLIHDQML 120
  121 SATLYYSGSG GLVMNTISCV DLALWDLFGK VVGLPVYKLL GGAVRDEIQF YATGARPDLA 180
  181 KEMGFIGGKM PTHWGPHDGD AGIRKDAAMV ADMREKCGED FWLMLDCWMS QDVNYATKLA 240
  241 HACAPYNLKW IEECLPPQQY ESYRELKRNA PVGMMVTSGE HHGTLQSFRT LSETGIDIMQ 300
  301 PDVGWCGGLT TLVEIAAIAK SRGQLVVPHG SSVYSHHAVI TFTNTPFSEF LMTSPDCSTM 360
  361 RPQFDPILLN EPVPVNGRIH KSVLDKPGFG VELNRDCNLK RPYSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.69897
Match:	2gshA
Description:	No description for 2gshA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits