YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126943026, gi...
Organism:	Listeria monocytogenes J0161
Length:	491 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126943026, gi....

Description	E-value	Query Range	Subject Range
gi\|46880037, gi\|... - gi\|46906772\|ref\|YP_013161.1\| hypothetical protein LMOf2365_0556 [Listeria monocytogenes str. 4b F236...	705.0	[0..1]	[491..1]
gi\|47092792, gi\|... - gi\|47092792\|ref\|ZP_00230576.1\| membrane protein, putative [Listeria monocytogenes str. 4b H7858], gi...	703.0	[0..1]	[491..1]
gi\|16799606 - gi\|16799606\|ref\|NP_469874.1\| transmembrane protein [Listeria innocua Clip11262] gi\|16412971, gi\|... - pir\|\|AC1499 transmembrane protein [imported] - Listeria innocua (strain Clip11262), gi\|16412971\|emb\|...	686.0	[0..1]	[491..1]
gi\|29375470, gi\|... - gi\|29375470\|ref\|NP_814624.1\| hypothetical protein EF0885 [Enterococcus faecalis V583], gi\|29342930\|g... gi\|227175878, gi... - gi\|227554996\|ref\|ZP_03985043.1\| transmembrane protein [Enterococcus faecalis HH22], gi\|227175878\|gb\|...	587.0	[0..11]	[472..14]
gi\|25497513 - pir\|\|C97144 probable membrane protein [imported] - Clostridium acetobutylicum gi\|15895253, gi\|... - gi\|15895253\|ref\|NP_348602.1\| hypothetical protein CAC1982 [Clostridium acetobutylicum ATCC 824], gi\|...	498.0	[0..31]	[470..26]
gi\|116102273, gi... - gi\|48870167\|ref\|ZP_00322895.1\| hypothetical protein PpenA01001173 [Pediococcus pentosaceus ATCC 2574...	313.0	[0..14]	[479..13]
gi\|90821191, gi\|... - gi\|90961997\|ref\|YP_535913.1\| hypothetical protein LSL_1022 [Lactobacillus salivarius UCC118], gi\|908...	304.0	[0..16]	[472..9]
gi\|150019051, gi... - gi\|82745073\|ref\|ZP_00907587.1\| transmembrane protein [Clostridium beijerincki NCIMB 8052], gi\|827272...	255.0	[0..26]	[472..25]
gi\|47569690, gi\|... - gi\|47569690\|ref\|ZP_00240365.1\| transmembrane protein, putative [Bacillus cereus G9241], gi\|47553658\|...	232.0	[0..33]	[474..23]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKVKSISM WLWHHLTPQI FAVICVFIIT IIALFMPPYI GMADNGDFFR IFSSNGLFVN  60
   61 NTNYDALQFG HFVKEFGIYQ YFNENQVAIY SSQSIFIQMA LLLNKLFWST TVFDVRFLGG 120
  121 LQLALLLPAI YLLVAGLTAK MKGWPGYVVA ALTVFIFADT AYTAYFNSFF SEGLILIMML 180
  181 YISAGFLLLY QHKYNDYAML GLIFVASLIL ITAKQQN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APIAVVIAVC GILVFFIRKN RAFRISAAAT FLVIFLSGVV MYAFIPGEFV TINQYQTMTR  60
   61 GVLLDSENPE KSLEEMGMNS EFALLKGTNF YQKYKMIDLD SKLMEKEFYP NYNFVTVLSY 120
  121 YLENPKQFGK MLDLSAQNSF SIRPFEMGNF EKATG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [373-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKFKEKTHFF SAYSDVKEKF APAKFTFLIL WALVFLICYG VSAFKHFREK NIRGTLLFDL  60
   61 IVLLIGSGFA VILVTIVGDG EADLTKHNFL FNVCFDLTML IGAASLLEVY LKKRGERNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits