YRC Public Data Repository - Protein Structure Prediction

Protein:	UTER_RAT
Organism:	Rattus norvegicus
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTER_RAT.

Description	E-value	Query Range	Subject Range
UTER_MOUSE - Uteroglobin OS=Mus musculus GN=Scgb1a1 PE=1 SV=1	120.0	[0..1]	[95..1]
gi\|60833198 - gi\|60833198\|gb\|AAX37040.1\| secretoglobin family 1A member 1 [synthetic construct]	117.0	[0..1]	[91..1]
UTER_MESAU - Uteroglobin OS=Mesocricetus auratus GN=SCGB1A1 PE=3 SV=1	117.0	[0..1]	[96..1]
gi\|123993399, gi... - gi\|61363169\|gb\|AAX42347.1\| secretoglobin family 1A member 1 [synthetic construct], gi\|61354834\|gb\|AA... SCGB1A1 - secretoglobin, family 1A, member 1 (uteroglobin)	117.0	[0..1]	[91..1]
gi\|55636235, gi\|... - gi\|55636235\|ref\|XP_522033.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146380...	117.0	[0..1]	[91..1]
gi\|109105771 - gi\|109105771\|ref\|XP_001116505.1\| PREDICTED: similar to Uteroglobin precursor (Secretoglobin family 1...	112.0	[0..1]	[91..1]
gi\|126352306, gi... - gi\|56749782\|sp\|Q8MKG2\|UTER_HORSE Uteroglobin precursor (Secretoglobin family 1A member 1), gi\|203855...	110.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAITITVL MLSICCSSAS SDICPGFLQV LEALLLGSES NYEAALKPFN PASDLQNAGT  60
   61 QLKRLVDTLP QETRINIVKL TEKILTSPLC EQDLRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1utrA
Description:	Clara cell 17kDa protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits