YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153819577, gi...
Organism:	Vibrio cholerae NCTC 8457
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153819577, gi....

Description	E-value	Query Range	Subject Range
gi\|227015435, gi... - gi\|75825338\|ref\|ZP_00754774.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae O395], g...	143.0	[0..1]	[155..1]
gi\|116220532, gi... - gi\|75819831\|ref\|ZP_00749895.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V51], gi...	142.0	[0..1]	[155..1]
gi\|170718687, gi... - gi\|46156862\|ref\|ZP_00131875.2\| COG0602: Organic radical activating enzymes [Haemophilus somnus 2336]...	139.0	[0..1]	[155..1]
gi\|148828314, gi... - gi\|148828314\|ref\|YP_001293067.1\| anaerobic ribonucleotide reductase-activating protein [Haemophilus ... gi\|68057903, gi\|... - gi\|68249704\|ref\|YP_248816.1\| anaerobic ribonucleotide reductase-activating protein [Haemophilus infl...	137.0	[0..1]	[155..1]
gi\|37201096, gi\|... - gi\|37676554\|ref\|NP_936950.1\| organic radical activating enzyme [Vibrio vulnificus YJ016], gi\|3720109...	137.0	[0..1]	[155..16]
gi\|78509911, gi\|... - gi\|78690684\|ref\|ZP_00855325.1\| Radical-activating enzyme [Shewanella sp. MR-7], gi\|78509911\|gb\|EAP23...	137.0	[0..1]	[150..1]
gi\|91189329, gi\|... - gi\|91226095\|ref\|ZP_01260985.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [V...	137.0	[0..1]	[153..1]
gi\|42630039 - gi\|42630039\|ref\|ZP_00155583.1\| COG0602: Organic radical activating enzymes [Haemophilus influenzae R... gi\|145267170, gi... - gi\|145635608\|ref\|ZP_01791306.1\| anaerobic ribonucleotide reductase-activating protein [Haemophilus i...	136.0	[0..1]	[155..1]
gi\|116186684, gi... - gi\|75857559\|ref\|ZP_00765173.1\| COG0602: Organic radical activating enzymes [Vibrio sp. Ex25], gi\|116... gi\|28809241, gi\|... - gi\|28900795\|ref\|NP_800450.1\| anaerobic ribonucleotide reductase-activating protein [Vibrio parahaemo... gi\|28809241 - gi\|28809241\|dbj\|BAC62283.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Vibr...	136.0	[0..1]	[153..1]
gi\|7331272 - gi\|7331272\|gb\|AAF60352.1\|AF242390_2 anaerobic ribonucleoside-triphosphate reductase activating prote... gi\|7331272\|gb\|AA... - anaerobic ribonucleoside-triphosphate reductase activating protein [Salmonella typhimurium]	136.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYHQYYPID VVNGPGTRCT LFVSGCVHQC KGCYNQSTWS LSSGHRYTQE MEDKIIADLK  60
   61 DTRIKRRGLS LSGGDPMHPA NLSAVLQLVQ RVKTECPDKD IWLWTGYTLA ELDDSQQALL 120
  121 PYIDVLVDGK FIQEQADPGL EWRGSANQVI HRFTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2fb2A
Description:	No description for 2fb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits