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View Structure Prediction Details

Protein: gi|109482296, gi...
Organism: Rattus norvegicus
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109482296, gi....

Description E-value Query
Range		 Subject
Range
LYNX1_PANTR - Ly-6/neurotoxin-like protein 1 OS=Pan troglodytes GN=LYNX1 PE=3 SV=1
 163.0 [0..1] [116..1]
LYNX1 - Ly6/neurotoxin 1
 162.0 [0..1] [116..1]
LYNX1_MACMU, LYN... - (P61050) Ly-6/neurotoxin-like protein 1 precursor, Ly-6/neurotoxin-like protein 1 OS=Macaca mulatta ...
 154.0 [0..1] [116..1]
LYNX1_SAIBB - Ly-6/neurotoxin-like protein 1 OS=Saimiri boliviensis boliviensis GN=LYNX1 PE=3 SV=1
gi|56122256 - gi|56122256|gb|AAV74279.1| Ly6/neurotoxin-1 [Saimiri boliviensis]
 148.0 [0..1] [116..1]
LYNX1_BOVIN - Ly-6/neurotoxin-like protein 1 OS=Bos taurus GN=LYNX1 PE=3 SV=1
 128.0 [0..1] [116..1]

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Predicted Domain #1
Region A:
Residues: [1-116] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLLTVFLV ALMGLPVAQA LECHVCAYNG DNCFKPMRCP AMATYCMTTR TYFTPYRMKV  60
   61 RKSCVPSCFE TVYDGYSKHA SATSCCQYYL CNGAGFATPV TLALVPALLA TFWSLL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.01
Match: 2j8bA
Description: No description for 2j8bA was found.

Predicted functions:

Term Confidence Notes
signal transducer activity 1.79909561917824 bayes_pls_golite062009
molecular transducer activity 1.79909561917824 bayes_pls_golite062009
binding 1.52242458734052 bayes_pls_golite062009
receptor activity 1.15368277805736 bayes_pls_golite062009
protein binding 1.13333989498989 bayes_pls_golite062009
receptor binding 0.293497216160518 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle