YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153220663, gi...
Organism:	Vibrio cholerae MAK 757
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153220663, gi....

Description	E-value	Query Range	Subject Range
gi\|59711225, gi\|... - gi\|59711225\|ref\|YP_204001.1\| scaffold protein [Vibrio fischeri ES114], gi\|59479326\|gb\|AAW85113.1\| Fe... gi\|197317327, gi... - gi\|197335837\|ref\|YP_002155375.1\| FeS cluster assembly scaffold IscU [Vibrio fischeri MJ11], gi\|19731...	199.0	[0..1]	[127..1]
gi\|240013962 - gi\|240013962\|ref\|ZP_04720875.1\| scaffold protein [Neisseria gonorrhoeae DGI18] gi\|240016404 - gi\|240016404\|ref\|ZP_04722944.1\| scaffold protein [Neisseria gonorrhoeae FA6140] gi\|239999130 - gi\|239999130\|ref\|ZP_04719054.1\| scaffold protein [Neisseria gonorrhoeae 35/02] gi\|240115865 - gi\|240115865\|ref\|ZP_04729927.1\| scaffold protein [Neisseria gonorrhoeae PID18] gi\|240118163 - gi\|240118163\|ref\|ZP_04732225.1\| scaffold protein [Neisseria gonorrhoeae PID1] gi\|240080523 - gi\|240080523\|ref\|ZP_04725066.1\| scaffold protein [Neisseria gonorrhoeae FA19] gi\|240113109 - gi\|240113109\|ref\|ZP_04727599.1\| scaffold protein [Neisseria gonorrhoeae MS11] gi\|240125902 - gi\|240125902\|ref\|ZP_04738788.1\| scaffold protein [Neisseria gonorrhoeae SK-92-679] gi\|240128414 - gi\|240128414\|ref\|ZP_04741075.1\| scaffold protein [Neisseria gonorrhoeae SK-93-1035] gi\|240121531 - gi\|240121531\|ref\|ZP_04734493.1\| scaffold protein [Neisseria gonorrhoeae PID24-1] gi\|240123711 - gi\|240123711\|ref\|ZP_04736667.1\| scaffold protein [Neisseria gonorrhoeae PID332] gi\|254669832 - gi\|254669832\|emb\|CBA04214.1\| NifU-like protein [Neisseria meningitidis alpha153] gi\|254493906, gi... - gi\|254493906\|ref\|ZP_05107077.1\| nitrogen fixation protein nifU [Neisseria gonorrhoeae 1291], gi\|2265... gi\|254805176, gi... - gi\|254805176\|ref\|YP_003083397.1\| putative NifU-like protein [Neisseria meningitidis], gi\|254668718\|e... gi\|59801061, gi\|... - gi\|59801061\|ref\|YP_207773.1\| scaffold protein [Neisseria gonorrhoeae FA 1090], gi\|59717956\|gb\|AAW893... gi\|161595807, gi... - gi\|161870254\|ref\|YP_001599424.1\| scaffold protein [Neisseria meningitidis 053442], gi\|161595807\|gb\|A... gi\|11256594 - pir\|\|G81852 iron-sulfur cofactor synthesis protein nifU homolog NMA1596 [similarity] - Neisseria men... gi\|224957017, gi... - gi\|225154711\|ref\|ZP_03723211.1\| hypothetical protein NEILACOT_02531 [Neisseria lactamica ATCC 23970]... gi\|7380237, gi\|1... - gi\|7380237\|emb\|CAB84823.1\| NifU-like protein [Neisseria meningitidis Z2491], gi\|218768397\|ref\|YP_002... gi\|121635086, gi... - gi\|121635086\|ref\|YP_975331.1\| scaffold protein [Neisseria meningitidis FAM18], gi\|120866792\|emb\|CAM1... gi\|193934133, gi... - gi\|194098843\|ref\|YP_002001906.1\| scaffold protein [Neisseria gonorrhoeae NCCP11945], gi\|193934133\|gb...	199.0	[0..1]	[127..1]
gi\|126638539, gi... - gi\|78369006\|ref\|ZP_00839185.1\| FeS cluster assembly scaffold IscU [Shewanella sp. PV-4], gi\|78358967...	199.0	[0..1]	[126..1]
gi\|7413463, gi\|1... - gi\|7413463\|gb\|AAF62330.1\| nifU protein [Neisseria meningitidis MC58], gi\|15677243\|ref\|NP_274396.1\| s...	199.0	[0..1]	[127..1]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	199.0	[0..1]	[125..1]
gi\|49077878 - gi\|49077878\|gb\|AAT49727.1\| PA3813 [synthetic construct]	198.0	[0..1]	[124..1]
gi\|58698557, gi\|... - gi\|58698557\|ref\|ZP_00373458.1\| FeS cluster assembly scaffold IscU [Wolbachia endosymbiont of Drosoph... gi\|42410460, gi\|... - gi\|42520720\|ref\|NP_966635.1\| scaffold protein [Wolbachia endosymbiont of Drosophila melanogaster], g... gi\|225592569, gi... - gi\|225630588\|ref\|YP_002727379.1\| NifU domain protein [Wolbachia sp. wRi], gi\|225592569\|gb\|ACN95588.1...	198.0	[0..1]	[127..1]
gi\|115365114, gi... - gi\|115377899\|ref\|ZP_01465085.1\| FeS cluster assembly scaffold IscU [Stigmatella aurantiaca DW4/3-1],...	198.0	[0..1]	[126..1]
gi\|11351414 - pir\|\|F83168 probable iron-binding protein IscU PA3813 [imported] - Pseudomonas aeruginosa (strain PA... gi\|194547702, gi... - gi\|84319377\|ref\|ZP_00967774.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|94412415, gi\|... - gi\|94412415\|ref\|ZP_01292344.1\| hypothetical protein PaerP_01005780 [Pseudomonas aeruginosa PA7], gi\|... gi\|46164499, gi\|... - gi\|46164499\|ref\|ZP_00137233.2\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|254242504, gi... - gi\|84325542\|ref\|ZP_00973577.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|107103333 - gi\|107103333\|ref\|ZP_01367251.1\| hypothetical protein PaerPA_01004402 [Pseudomonas aeruginosa PACS2] gi\|9949987, gi\|1... - gi\|9949987\|gb\|AAG07200.1\|AE004799_6 probable iron-binding protein IscU [Pseudomonas aeruginosa PAO1]... gi\|218770126, gi... - gi\|218889903\|ref\|YP_002438767.1\| scaffold protein [Pseudomonas aeruginosa LESB58], gi\|218770126\|emb\|...	198.0	[0..1]	[124..1]
gi\|134134592, gi... - gi\|67542924\|ref\|ZP_00420858.1\| FeS cluster assembly scaffold IscU [Burkholderia vietnamiensis G4], g...	197.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSEKVIDH YENPRNVGSF DKEDPSVGSG MVGAPACGDV MRLQIKVSPE GIIEDAKFKT  60
   61 YGCGSAIASS SLVTEWVKGK SIDEAAAIKN SEIAEELELP PVKIHCSILA EDAIKAAVAD 120
  121 YKKKHQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: