YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153175180, gi...
Organism:	Listeria monocytogenes FSL N3-165
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153175180, gi....

Description	E-value	Query Range	Subject Range
gi\|228748064, gi... - gi\|229013297\|ref\|ZP_04170438.1\| Purine nucleoside phosphorylase [Bacillus mycoides DSM 2048], gi\|228... gi\|228648571, gi... - gi\|229134896\|ref\|ZP_04263703.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST196], gi\|228... gi\|229061760, gi... - gi\|229061760\|ref\|ZP_04199093.1\| Purine nucleoside phosphorylase [Bacillus cereus AH603], gi\|22871750... gi\|163864026, gi... - gi\|89207378\|ref\|ZP_01185921.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos... gi\|228614679, gi... - gi\|229168831\|ref\|ZP_04296550.1\| Purine nucleoside phosphorylase [Bacillus cereus AH621], gi\|22861467...	287.0	[0..1]	[271..1]
gi\|89099050, gi\|... - gi\|89099050\|ref\|ZP_01171929.1\| purine nucleoside phosphorylase [Bacillus sp. NRRL B-14911], gi\|89086...	286.0	[0..1]	[270..1]
gi\|49186994, gi\|... - gi\|49186994\|ref\|YP_030246.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Sterne], gi\|49... gi\|52141407, gi\|... - gi\|52141407\|ref\|YP_085423.1\| purine nucleoside phosphorylase [Bacillus cereus E33L], gi\|51974876\|gb\|... gi\|42739129, gi\|... - gi\|42783201\|ref\|NP_980448.1\| purine nucleoside phosphorylase [Bacillus cereus ATCC 10987], gi\|427391... gi\|47529604, gi\|... - gi\|47529604\|ref\|YP_020953.1\| purine nucleoside phosphorylase [Bacillus anthracis str. 'Ames Ancestor... gi\|65321480, gi\|... - gi\|65321480\|ref\|ZP_00394439.1\| COG0005: Purine nucleoside phosphorylase [Bacillus anthracis str. A20... gi\|30258809, gi\|... - gi\|30264164\|ref\|NP_846541.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Ames], gi\|3025... gi\|47568144, gi\|... - gi\|47568144\|ref\|ZP_00238848.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Ba... gi\|228967121, gi... - gi\|228967121\|ref\|ZP_04128157.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar sott... gi\|228772508, gi... - gi\|228987279\|ref\|ZP_04147400.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar toch... gi\|228723572, gi... - gi\|229047780\|ref\|ZP_04193360.1\| Purine nucleoside phosphorylase [Bacillus cereus AH676], gi\|22872357... gi\|228711527, gi... - gi\|229071591\|ref\|ZP_04204809.1\| Purine nucleoside phosphorylase [Bacillus cereus F65185], gi\|2287115... gi\|164713069, gi... - gi\|165871150\|ref\|ZP_02215800.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0488], gi\|... gi\|229081344, gi... - gi\|229081344\|ref\|ZP_04213847.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock4-2], gi\|228701... gi\|229093148, gi... - gi\|229093148\|ref\|ZP_04224266.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock3-42], gi\|22869... gi\|167512504, gi... - gi\|167639445\|ref\|ZP_02397716.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0193], gi\|... gi\|229111561, gi... - gi\|229111561\|ref\|ZP_04241112.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock1-15], gi\|22867... gi\|167633565, gi... - gi\|167633565\|ref\|ZP_02391889.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0442], gi\|... gi\|228659744, gi... - gi\|229123609\|ref\|ZP_04252804.1\| Purine nucleoside phosphorylase [Bacillus cereus 95/8201], gi\|228659... gi\|229129367, gi... - gi\|229129367\|ref\|ZP_04258338.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228642612, gi... - gi\|229140822\|ref\|ZP_04269367.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST26], gi\|2286... gi\|75763025, gi\|... - gi\|75763025\|ref\|ZP_00742816.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar israe... gi\|228636832, gi... - gi\|229146662\|ref\|ZP_04275029.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST24], gi\|2286... gi\|229152289, gi... - gi\|229152289\|ref\|ZP_04280482.1\| Purine nucleoside phosphorylase [Bacillus cereus m1550], gi\|22863125... gi\|229157671, gi... - gi\|229157671\|ref\|ZP_04285746.1\| Purine nucleoside phosphorylase [Bacillus cereus ATCC 4342], gi\|2286... gi\|229180367, gi... - gi\|229180367\|ref\|ZP_04307710.1\| Purine nucleoside phosphorylase [Bacillus cereus 172560W], gi\|228603... gi\|229186332, gi... - gi\|229186332\|ref\|ZP_04313497.1\| Purine nucleoside phosphorylase [Bacillus cereus BGSC 6E1], gi\|22859... gi\|229198210, gi... - gi\|229198210\|ref\|ZP_04324918.1\| Purine nucleoside phosphorylase [Bacillus cereus m1293], gi\|22858522... gi\|217961580, gi... - gi\|217961580\|ref\|YP_002340150.1\| purine nucleoside phosphorylase [Bacillus cereus AH187], gi\|2170672... gi\|229265706, gi... - gi\|229601298\|ref\|YP_002868387.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0248], gi... gi\|206976231, gi... - gi\|206976231\|ref\|ZP_03237139.1\| purine nucleoside phosphorylase [Bacillus cereus H3081.97], gi\|20674... gi\|254683855 - gi\|254683855\|ref\|ZP_05147715.1\| purine nucleoside phosphorylase [Bacillus anthracis str. CNEVA-9066] gi\|218542258, gi... - gi\|218899249\|ref\|YP_002447660.1\| purine nucleoside phosphorylase [Bacillus cereus G9842], gi\|2185422... gi\|254721690 - gi\|254721690\|ref\|ZP_05183479.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A1055] gi\|218163409, gi... - gi\|218235452\|ref\|YP_002368891.1\| purine nucleoside phosphorylase [Bacillus cereus B4264], gi\|2181634... gi\|254736202 - gi\|254736202\|ref\|ZP_05193908.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Western Nor... gi\|221241595, gi... - gi\|222097537\|ref\|YP_002531594.1\| purine-nucleoside phosphorylase [Bacillus cereus Q1], gi\|221241595\|... gi\|254744091 - gi\|254744091\|ref\|ZP_05201774.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Kruger B] gi\|218536132, gi... - gi\|218905226\|ref\|YP_002453060.1\| purine nucleoside phosphorylase [Bacillus cereus AH820], gi\|2185361... gi\|254754129 - gi\|254754129\|ref\|ZP_05206164.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Vollum] gi\|254758181 - gi\|254758181\|ref\|ZP_05210208.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Australia 9... gi\|170129394, gi... - gi\|170705854\|ref\|ZP_02896317.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0389], gi\|... gi\|170668893, gi... - gi\|170687276\|ref\|ZP_02878494.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0465], gi\|... gi\|190565867, gi... - gi\|190565867\|ref\|ZP_03018786.1\| purine nucleoside phosphorylase [Bacillus anthracis Tsiankovskii-I],... gi\|177652581, gi... - gi\|177652581\|ref\|ZP_02934997.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0174], gi\|... gi\|196038633, gi... - gi\|196038633\|ref\|ZP_03105941.1\| purine nucleoside phosphorylase [Bacillus cereus NVH0597-99], gi\|196... gi\|196034807, gi... - gi\|196034807\|ref\|ZP_03102214.1\| purine nucleoside phosphorylase [Bacillus cereus W], gi\|195992346\|gb... gi\|206971082, gi... - gi\|206971082\|ref\|ZP_03232033.1\| purine nucleoside phosphorylase [Bacillus cereus AH1134], gi\|2067338... gi\|196021929, gi... - gi\|196047180\|ref\|ZP_03114396.1\| purine nucleoside phosphorylase [Bacillus cereus 03BB108], gi\|196021... gi\|118418514, gi... - gi\|118479289\|ref\|YP_896440.1\| purine nucleoside phosphorylase [Bacillus thuringiensis str. Al Hakam]... gi\|225866072, gi... - gi\|225866072\|ref\|YP_002751450.1\| purine nucleoside phosphorylase [Bacillus cereus 03BB102], gi\|22578... gi\|227816865, gi... - gi\|227816865\|ref\|YP_002816874.1\| purine nucleoside phosphorylase [Bacillus anthracis str. CDC 684], ... gi\|228902597, gi... - gi\|228902597\|ref\|ZP_04066748.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis IBL 4222], g... gi\|228849752, gi... - gi\|228909917\|ref\|ZP_04073738.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis IBL 200], gi... gi\|228842913, gi... - gi\|228916726\|ref\|ZP_04080291.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar puls... gi\|228836893, gi... - gi\|228922838\|ref\|ZP_04086136.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar huaz... gi\|228830426, gi... - gi\|228929136\|ref\|ZP_04092163.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar pond... gi\|228935408, gi... - gi\|228935408\|ref\|ZP_04098226.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar anda... gi\|228954371, gi... - gi\|228954371\|ref\|ZP_04116397.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar kurs... gi\|228960352, gi... - gi\|228960352\|ref\|ZP_04122005.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar paki...	284.0	[0..1]	[271..1]
gi\|49480323, gi\|... - gi\|49480323\|ref\|YP_038146.1\| purine nucleoside phosphorylase [Bacillus thuringiensis serovar konkuki...	284.0	[0..1]	[271..1]
gi\|152976496, gi... - gi\|89203719\|ref\|ZP_01182322.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos...	282.0	[0..1]	[271..1]
PUNA_GEOSE - Purine nucleoside phosphorylase 1 OS=Geobacillus stearothermophilus GN=punA PE=1 SV=1	282.0	[0..1]	[272..1]
gi\|56380690, gi\|... - gi\|56420848\|ref\|YP_148166.1\| purine nucleoside phosphorylase [Geobacillus kaustophilus HTA426], gi\|5...	280.0	[0..1]	[272..1]
gi\|217963895, gi... - gi\|217963895\|ref\|YP_002349573.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [... gi\|226224558, gi... - gi\|226224558\|ref\|YP_002758665.1\| purine-nucleoside phosphorylase [Listeria monocytogenes Clip81459],... gi\|254871635 - gi\|254871635\|ref\|ZP_05244345.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL N1-017] gi\|254825551 - gi\|254825551\|ref\|ZP_05230552.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J1-194] gi\|46908187, gi\|... - gi\|46908187\|ref\|YP_014576.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 4b F2365],... gi\|47093382, gi\|... - gi\|47093382\|ref\|ZP_00231149.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 4b H7858... gi\|254992938 - gi\|254992938\|ref\|ZP_05275128.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J2-064]	280.0	[0..1]	[272..1]
gi\|16801133 - gi\|16801133\|ref\|NP_471401.1\| purine nucleoside phosphorylase [Listeria innocua Clip11262] gi\|25286839, gi\|... - pir\|\|AI1690 purine-nucleoside phosphorylase homolog pnp [imported] - Listeria innocua (strain Clip11...	279.0	[0..1]	[272..1]
gi\|23099300, gi\|... - gi\|23099300\|ref\|NP_692766.1\| purine nucleoside phosphorylase [Oceanobacillus iheyensis HTE831], gi\|2...	274.0	[0..1]	[271..1]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEKVNEAV AKIRESYTGT PKIGLILGSG LGVLADEVNQ PIKLSYSEIP HFPVSTVEGH  60
   61 AGQFVFGELE NKEVVAMQGR FHFYEGYSMQ DVTFPVRVMK ELGVEVLIVT NAAGGVNELY 120
  121 SAGDLMLISD HINFTGTSPL IGPNDEHFGP RFPDMSEAYN LALRVDARLI AQELNLTIRE 180
  181 GVYAGFSGPT YETPAEIQMM RTLGADAVGM STVPEVIIAN HAGLRVLGIS CITNMAAGIL 240
  241 DQPLSHTEVI ETTDQVRSTF LQYVKAIVAK IS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.30103
Match:	1fxuA
Description:	Purine nucleoside phosphorylase, PNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
purine-nucleoside phosphorylase activity	2.88401222133542	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	0.716715652241981	bayes_pls_golite062009
purine binding	0.325495777059787	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009
nucleoside binding	0.163360573459472	bayes_pls_golite062009
nucleobase binding	0.0710899111612756	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: