YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124116865, gi...
Organism:	Vibrio cholerae 1587
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124116865, gi....

Description	E-value	Query Range	Subject Range
gi\|28806008 - gi\|28806008\|dbj\|BAC59284.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897795, gi\|... - gi\|28897795\|ref\|NP_797400.1\| hypothetical protein VP1021 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	140.0	[0..1]	[82..1]
gi\|54309642, gi\|... - gi\|54309642\|ref\|YP_130662.1\| hypothetical protein PBPRA2478 [Photobacterium profundum SS9], gi\|46914...	137.0	[0..1]	[81..1]
gi\|148876512, gi... - gi\|153827931\|ref\|ZP_01980598.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887651... gi\|229523820, gi... - gi\|229523820\|ref\|ZP_04413225.1\| protein YciN [Vibrio cholerae bv. albensis VL426], gi\|229337401\|gb\|E... gi\|229342224, gi... - gi\|229520669\|ref\|ZP_04410092.1\| protein YciN [Vibrio cholerae TM 11079-80], gi\|229342224\|gb\|EEO07219... tr\|D7H9K7\|D7H9K7... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_01259 PE=4 SV=1 gi\|254223375, gi... - gi\|75822432\|ref\|ZP_00752059.1\| hypothetical protein VchoR_01002349 [Vibrio cholerae RC385], gi\|25422...	137.0	[0..1]	[82..1]
gi\|27365460, gi\|... - gi\|27365460\|ref\|NP_760988.1\| hypothetical protein VV1_2128 [Vibrio vulnificus CMCP6], gi\|27361608\|gb... gi\|37199248, gi\|... - gi\|37680500\|ref\|NP_935109.1\| hypothetical protein VV2316 [Vibrio vulnificus YJ016], gi\|37199248\|dbj\|...	137.0	[0..1]	[82..1]
gi\|227118184, gi... - gi\|75827081\|ref\|ZP_00756516.1\| hypothetical protein VchoO_01001241 [Vibrio cholerae O395], gi\|227118... gi\|197753171, gi... - gi\|254285324\|ref\|ZP_04960289.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|153826252, gi... - gi\|153826252\|ref\|ZP_01978919.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740017... gi\|121727934, gi... - gi\|75815601\|ref\|ZP_00746101.1\| hypothetical protein VchoV_01001724 [Vibrio cholerae V52], gi\|1217279...	136.0	[0..1]	[82..1]
gi\|90326919, gi\|... - gi\|90412195\|ref\|ZP_01220201.1\| hypothetical protein P3TCK_27899 [Photobacterium profundum 3TCK], gi\|...	136.0	[0..1]	[81..1]
gi\|91228212, gi\|... - gi\|91228212\|ref\|ZP_01262194.1\| hypothetical protein V12G01_20693 [Vibrio alginolyticus 12G01], gi\|91...	134.0	[0..1]	[82..1]
gi\|89050198, gi\|... - gi\|89074060\|ref\|ZP_01160561.1\| hypothetical protein SKA34_03414 [Photobacterium sp. SKA34], gi\|89050...	130.0	[0..1]	[80..1]
gi\|90437597, gi\|... - gi\|90581226\|ref\|ZP_01237024.1\| hypothetical protein VAS14_18409 [Vibrio angustum S14], gi\|90437597\|g...	129.0	[0..1]	[80..1]
lcl\|NC_016856.1_... - [gene=yciN] [protein=hypothetical protein] [protein_id=YP_005237641.1] [location=1823481..1823732] gi\|238911893 - gi\|238911893\|ref\|ZP_04655730.1\| hypothetical protein SentesTe_12276 [Salmonella enterica subsp. ente... gi\|25512457, gi\|... - gi\|25512457\|pir\|\|AE0654 conserved hypothetical protein STY1335 [imported] - Salmonella enterica subs... gi\|16765059, gi\|... - gi\|16765059\|ref\|NP_460674.1\| hypothetical protein STM1715 [Salmonella typhimurium LT2], gi\|16420245\|... gi\|29137693, gi\|... - gi\|29142064\|ref\|NP_805406.1\| hypothetical protein t1628 [Salmonella enterica subsp. enterica serovar... gi\|62180282, gi\|... - gi\|62180282\|ref\|YP_216699.1\| hypothetical protein SC1712 [Salmonella enterica subsp. enterica serova... gi\|16760165 - gi\|16760165\|ref\|NP_455782.1\| hypothetical protein STY1335 [Salmonella enterica subsp. enterica serov... gi\|194735847, gi... - gi\|194735847\|ref\|YP_002114747.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|197211978, gi... - gi\|197248275\|ref\|YP_002146311.1\| protein YciN [Salmonella enterica subsp. enterica serovar Agona str... gi\|197263856, gi... - gi\|197263856\|ref\|ZP_03163930.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197937518, gi... - gi\|198243002\|ref\|YP_002215426.1\| protein YciN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|205343886, gi... - gi\|205343886\|gb\|EDZ30650.1\| protein YciN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194446404, gi... - gi\|194446404\|ref\|YP_002040969.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport s... gi\|194449605, gi... - gi\|194449605\|ref\|YP_002045762.1\| hypothetical protein SeHA_C1905 [Salmonella enterica subsp. enteric... gi\|194472676, gi... - gi\|194472676\|ref\|ZP_03078660.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168237767, gi... - gi\|197289237\|gb\|EDY28604.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|168241293, gi... - gi\|205339113\|gb\|EDZ25877.1\| protein YciN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168260064, gi... - gi\|205350907\|gb\|EDZ37538.1\| protein YciN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168462811, gi... - gi\|195634103\|gb\|EDX52455.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161363160, gi... - gi\|161613796\|ref\|YP_001587761.1\| hypothetical protein SPAB_01530 [Salmonella enterica subsp. enteric... gi\|167549777, gi... - gi\|205324978\|gb\|EDZ12817.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205328238, gi... - gi\|205328238\|gb\|EDZ15002.1\| protein YciN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205335510, gi... - gi\|205335510\|gb\|EDZ22274.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|224468320, gi... - gi\|224583793\|ref\|YP_002637591.1\| hypothetical protein SPC_2014 [Salmonella enterica subsp. enterica ... gi\|213647993 - gi\|213647993\|ref\|ZP_03378046.1\| hypothetical protein SentesTy_12329 [Salmonella enterica subsp. ente... gi\|213855229 - gi\|213855229\|ref\|ZP_03383469.1\| hypothetical protein SentesT_14617 [Salmonella enterica subsp. enter... gi\|213980310 - gi\|213980310\|ref\|ZP_03407569.1\| hypothetical protein Salmonellaentericaenterica_39945 [Salmonella en... gi\|214002709 - gi\|214002709\|ref\|ZP_03413444.1\| hypothetical protein Salmonellentericaenterica_21254 [Salmonella ent... gi\|213423757 - gi\|213423757\|ref\|ZP_03356737.1\| hypothetical protein Salmonentericaenterica_40503 [Salmonella enteri... gi\|213424432 - gi\|213424432\|ref\|ZP_03357245.1\| hypothetical protein SentesTyphi_01455 [Salmonella enterica subsp. e... gi\|213582176 - gi\|213582176\|ref\|ZP_03364002.1\| hypothetical protein SentesTyph_13629 [Salmonella enterica subsp. en... gi\|213609446 - gi\|213609446\|ref\|ZP_03369272.1\| hypothetical protein SentesTyp_02488 [Salmonella enterica subsp. ent... gi\|200390154, gi... - gi\|200390154\|ref\|ZP_03216765.1\| protein YciN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204322931, gi... - gi\|204927589\|ref\|ZP_03218790.1\| protein YciN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|205352611, gi... - gi\|205352611\|ref\|YP_002226412.1\| hypothetical protein SG1399 [Salmonella enterica subsp. enterica se... gi\|207856772, gi... - gi\|207856772\|ref\|YP_002243423.1\| hypothetical protein SEN1318 [Salmonella enterica subsp. enterica s...	128.0	[0..3]	[80..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKKPITEF ELLLIANQLI QDHECYIEGM RATQVEEKEG VLVFKGEYFL TEQGLPTEKT  60
   61 TAVFNMFKYL AHHLSPEFTL QK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits