YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_LISW6
Organism:	Listeria welshimeri serovar 6b str. SLCC5334
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_LISW6.

Description	E-value	Query Range	Subject Range
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	113.0	[0..7]	[79..3]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	113.0	[0..1]	[77..1]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	113.0	[0..7]	[79..3]
gi\|228771012, gi... - gi\|228988700\|ref\|ZP_04148785.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar tochigiens... gi\|228982187, gi... - gi\|228982187\|ref\|ZP_04142476.1\| 30S ribosomal protein S18 [Bacillus thuringiensis Bt407], gi\|2287775... gi\|228710183, gi... - gi\|229072937\|ref\|ZP_04206133.1\| 30S ribosomal protein S18 [Bacillus cereus F65185], gi\|228710183\|gb\|... gi\|228722204, gi... - gi\|229051141\|ref\|ZP_04194685.1\| 30S ribosomal protein S18 [Bacillus cereus AH676], gi\|228722204\|gb\|E... gi\|228670564, gi... - gi\|229112885\|ref\|ZP_04242416.1\| 30S ribosomal protein S18 [Bacillus cereus Rock1-15], gi\|228670564\|g... gi\|228700626, gi... - gi\|229082681\|ref\|ZP_04215135.1\| 30S ribosomal protein S18 [Bacillus cereus Rock4-2], gi\|228700626\|gb... gi\|229142221, gi... - gi\|229142221\|ref\|ZP_04270745.1\| 30S ribosomal protein S18 [Bacillus cereus BDRD-ST26], gi\|228641239\|... gi\|228652735, gi... - gi\|229130718\|ref\|ZP_04259671.1\| 30S ribosomal protein S18 [Bacillus cereus BDRD-Cer4], gi\|228652735\|... gi\|229153631, gi... - gi\|229153631\|ref\|ZP_04281807.1\| 30S ribosomal protein S18 [Bacillus cereus m1550], gi\|228629817\|gb\|E... gi\|228635447, gi... - gi\|229148022\|ref\|ZP_04276361.1\| 30S ribosomal protein S18 [Bacillus cereus BDRD-ST24], gi\|228635447\|... gi\|229164423, gi... - gi\|229164423\|ref\|ZP_04292351.1\| 30S ribosomal protein S18 [Bacillus cereus R309803], gi\|228619028\|gb... gi\|229159032, gi... - gi\|229159032\|ref\|ZP_04287088.1\| 30S ribosomal protein S18 [Bacillus cereus ATCC 4342], gi\|228624451\|... gi\|229193723, gi... - gi\|229193723\|ref\|ZP_04320664.1\| 30S ribosomal protein S18 [Bacillus cereus ATCC 10876], gi\|228589748... gi\|228601751, gi... - gi\|229181718\|ref\|ZP_04309041.1\| 30S ribosomal protein S18 [Bacillus cereus 172560W], gi\|228601751\|gb... gi\|229199602, gi... - gi\|229199602\|ref\|ZP_04326262.1\| 30S ribosomal protein S18 [Bacillus cereus m1293], gi\|228583876\|gb\|E... gi\|206970197, gi... - gi\|206970197\|ref\|ZP_03231150.1\| 30S ribosomal protein S18 [Bacillus cereus AH1134], gi\|206734774\|gb\|... gi\|47554659, gi\|... - gi\|47568671\|ref\|ZP_00239368.1\| ribosomal protein S18 [Bacillus cereus G9241], gi\|47554659\|gb\|EAL1301... RS18_BACCR - 30S ribosomal protein S18 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... RS18_BACC1 - 30S ribosomal protein S18 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpsR PE=3 SV=1 RS18_BACC4 - 30S ribosomal protein S18 OS=Bacillus cereus (strain B4264) GN=rpsR PE=3 SV=1 gi\|228911311, gi... - gi\|228911311\|ref\|ZP_04075115.1\| 30S ribosomal protein S18 [Bacillus thuringiensis IBL 200], gi\|22884... RS18_BACC2 - 30S ribosomal protein S18 OS=Bacillus cereus (strain G9842) GN=rpsR PE=3 SV=1 gi\|228905416, gi... - gi\|228905416\|ref\|ZP_04069371.1\| 30S ribosomal protein S18 [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|206975889, gi... - gi\|206975889\|ref\|ZP_03236800.1\| 30S ribosomal protein S18 [Bacillus cereus H3081.97], gi\|206745983\|g... gi\|228817047, gi... - gi\|228942621\|ref\|ZP_04105153.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar berliner A... RS18_BACC7 - 30S ribosomal protein S18 OS=Bacillus cereus (strain AH187) GN=rpsR PE=3 SV=1 gi\|228924217, gi... - gi\|228924217\|ref\|ZP_04087488.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar huazhongen... gi\|228961736, gi... - gi\|228961736\|ref\|ZP_04123339.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar pakistani ... gi\|228803951, gi... - gi\|228955723\|ref\|ZP_04117718.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar kurstaki s... RS18_BACCQ - 30S ribosomal protein S18 OS=Bacillus cereus (strain Q1) GN=rpsR PE=3 SV=1 gi\|228784161, gi... - gi\|228975551\|ref\|ZP_04136103.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar thuringien... gi\|228968624, gi... - gi\|228968624\|ref\|ZP_04129607.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar sotto str....	110.0	[0..1]	[77..1]
RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsR PE=3 SV=1 gi\|229497916, gi... - gi\|229497916\|ref\|ZP_04391615.1\| ribosomal protein S18 [Geobacillus sp. Y412MC52], gi\|229331342\|gb\|EE... gi\|196249872, gi... - gi\|196249872\|ref\|ZP_03148568.1\| ribosomal protein S18 [Geobacillus sp. G11MC16], gi\|196210748\|gb\|EDY... gi\|221086943, gi... - gi\|221086943\|ref\|ZP_03556483.1\| ribosomal protein S18 [Geobacillus sp. Y412MC61], gi\|220708996\|gb\|EE... RS18_GEOTN - 30S ribosomal protein S18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsR PE=3 SV=2 RS18_GEOSE - 30S ribosomal protein S18 OS=Geobacillus stearothermophilus GN=rpsR PE=1 SV=2 RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus GN=rpsR PE=3 SV=1	110.0	[0..1]	[78..1]
gi\|172080211, gi... - gi\|177655284\|ref\|ZP_02936838.1\| ribosomal protein S18 [Bacillus anthracis str. A0174], gi\|172080211\|... gi\|228765643, gi... - gi\|228994191\|ref\|ZP_04154091.1\| 30S ribosomal protein S18 [Bacillus pseudomycoides DSM 12442], gi\|22... gi\|190559607, gi... - gi\|190569300\|ref\|ZP_03022194.1\| ribosomal protein S18 [Bacillus anthracis Tsiankovskii-I], gi\|190559... gi\|229000261, gi... - gi\|229000261\|ref\|ZP_04159830.1\| 30S ribosomal protein S18 [Bacillus mycoides Rock3-17], gi\|228759593... gi\|196036074, gi... - gi\|196036074\|ref\|ZP_03103474.1\| ribosomal protein S18 [Bacillus cereus W], gi\|195991241\|gb\|EDX55209.... gi\|229007785, gi... - gi\|229007785\|ref\|ZP_04165371.1\| 30S ribosomal protein S18 [Bacillus mycoides Rock1-4], gi\|228753462\|... gi\|196041980, gi... - gi\|196041980\|ref\|ZP_03109267.1\| ribosomal protein S18 [Bacillus cereus NVH0597-99], gi\|196027235\|gb\|... gi\|228728196, gi... - gi\|229035130\|ref\|ZP_04189076.1\| 30S ribosomal protein S18 [Bacillus cereus AH1271], gi\|228728196\|gb\|... gi\|196045471, gi... - gi\|196045471\|ref\|ZP_03112702.1\| ribosomal protein S18 [Bacillus cereus 03BB108], gi\|196023678\|gb\|EDX... gi\|229087959, gi... - gi\|229087959\|ref\|ZP_04220067.1\| 30S ribosomal protein S18 [Bacillus cereus Rock3-44], gi\|228695344\|g... RS18_BACC0 - 30S ribosomal protein S18 OS=Bacillus cereus (strain AH820) GN=rpsR PE=3 SV=1 gi\|228688830, gi... - gi\|229094583\|ref\|ZP_04225650.1\| 30S ribosomal protein S18 [Bacillus cereus Rock3-42], gi\|228688830\|g... gi\|228683514, gi... - gi\|229099899\|ref\|ZP_04230822.1\| 30S ribosomal protein S18 [Bacillus cereus Rock3-29], gi\|228683514\|g... gi\|229118962, gi... - gi\|229118962\|ref\|ZP_04248307.1\| 30S ribosomal protein S18 [Bacillus cereus Rock1-3], gi\|228664487\|gb... gi\|49182236, gi\|... - gi\|49188309\|ref\|YP_031562.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Sterne], gi\|49182236... gi\|228658476, gi... - gi\|229124975\|ref\|ZP_04254149.1\| 30S ribosomal protein S18 [Bacillus cereus 95/8201], gi\|228658476\|gb... RS18_BACHK - 30S ribosomal protein S18 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpsR PE=3 SV=... gi\|229170175, gi... - gi\|229170175\|ref\|ZP_04297861.1\| 30S ribosomal protein S18 [Bacillus cereus AH621], gi\|228613276\|gb\|E... gi\|30265490, gi\|... - gi\|30265490\|ref\|NP_847867.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Ames], gi\|30260168\|g... gi\|229187701, gi... - gi\|229187701\|ref\|ZP_04314837.1\| 30S ribosomal protein S18 [Bacillus cereus BGSC 6E1], gi\|228595769\|g... gi\|47506206, gi\|... - gi\|47531058\|ref\|YP_022407.1\| 30S ribosomal protein S18 [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|164711247, gi... - gi\|165873035\|ref\|ZP_02217656.1\| ribosomal protein S18 [Bacillus anthracis str. A0488], gi\|164711247\|... RS18_BACAA - 30S ribosomal protein S18 OS=Bacillus anthracis (strain A0248) GN=rpsR PE=3 SV=1 gi\|167529549, gi... - gi\|167635075\|ref\|ZP_02393392.1\| ribosomal protein S18 [Bacillus anthracis str. A0442], gi\|167529549\|... gi\|254687087 - gi\|254687087\|ref\|ZP_05150945.1\| 30S ribosomal protein S18 [Bacillus anthracis str. CNEVA-9066] gi\|65317453, gi\|... - gi\|65317453\|ref\|ZP_00390412.1\| COG0238: Ribosomal protein S18 [Bacillus anthracis str. A2012], ref\|N... gi\|167510312, gi... - gi\|167641758\|ref\|ZP_02400001.1\| ribosomal protein S18 [Bacillus anthracis str. A0193], gi\|167510312\|... gi\|254724130 - gi\|254724130\|ref\|ZP_05185915.1\| 30S ribosomal protein S18 [Bacillus anthracis str. A1055] gi\|170689458, gi... - gi\|170689458\|ref\|ZP_02880648.1\| ribosomal protein S18 [Bacillus anthracis str. A0465], gi\|170666560\|... gi\|254735147 - gi\|254735147\|ref\|ZP_05192857.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Western North Ame... gi\|170707550, gi... - gi\|170707550\|ref\|ZP_02898003.1\| ribosomal protein S18 [Bacillus anthracis str. A0389], gi\|170127546\|... gi\|254742144 - gi\|254742144\|ref\|ZP_05199831.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Kruger B] gi\|254755946 - gi\|254755946\|ref\|ZP_05207978.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Vollum] gi\|254761374 - gi\|254761374\|ref\|ZP_05213396.1\| 30S ribosomal protein S18 [Bacillus anthracis str. Australia 94] RS18_BACWK - 30S ribosomal protein S18 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsR PE=3 SV=1 RS18_BACAH - 30S ribosomal protein S18 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsR PE=3 SV=1 RS18_BACAN - 30S ribosomal protein S18 OS=Bacillus anthracis GN=rpsR PE=3 SV=1 RS18_BACHK - 30S ribosomal protein S18 OS=Bacillus thuringiensis subsp. konkukian GN=rpsR PE=3 SV=1 RS18_BACCZ - 30S ribosomal protein S18 OS=Bacillus cereus (strain ZK / E33L) GN=rpsR PE=3 SV=1 RS18_BACC3 - 30S ribosomal protein S18 OS=Bacillus cereus (strain 03BB102) GN=rpsR PE=3 SV=1 RS18_BACAC - 30S ribosomal protein S18 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rpsR PE=3 SV=1 gi\|228918084, gi... - gi\|228918084\|ref\|ZP_04081612.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar pulsiensis... gi\|228930478, gi... - gi\|228930478\|ref\|ZP_04093478.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar pondicheri... gi\|228822961, gi... - gi\|228936752\|ref\|ZP_04099543.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar andalousie... gi\|228949194, gi... - gi\|228949194\|ref\|ZP_04111462.1\| 30S ribosomal protein S18 [Bacillus thuringiensis serovar monterrey ...	110.0	[0..1]	[77..1]
RS18_LACJO - 30S ribosomal protein S18 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsR P... gi\|238834035, gi... - gi\|238853347\|ref\|ZP_04643727.1\| ribosomal protein S18 [Lactobacillus gasseri 202-4], gi\|238834035\|gb... RS18_LACJO - 30S ribosomal protein S18 OS=Lactobacillus johnsonii GN=rpsR PE=3 SV=1 gi\|227889149, gi... - gi\|227889149\|ref\|ZP_04006954.1\| 30S ribosomal protein S18 [Lactobacillus johnsonii ATCC 33200], gi\|2... gi\|227521910, gi... - gi\|227521910\|ref\|ZP_03951959.1\| 30S ribosomal protein S18 [Lactobacillus gasseri JV-V03], gi\|2270937...	109.0	[0..1]	[78..1]
gi\|242349573, gi... - gi\|242372656\|ref\|ZP_04818230.1\| 30S ribosomal protein S18 [Staphylococcus epidermidis M23864:W1], gi... RS18_STAEP - (Q8CQP6) 30S ribosomal protein S18 RS18_STAEQ - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsR PE=3 SV=... gi\|223043454, gi... - gi\|223043454\|ref\|ZP_03613500.1\| ribosomal protein S18 [Staphylococcus capitis SK14], gi\|222443243\|gb... RS18_STAES - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsR PE=3 SV=1	109.0	[0..12]	[79..13]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	109.0	[0..12]	[78..13]
RS18_STRPG - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsR PE=3 SV=1 RS18_STRPB - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsR PE=3 SV=1 RS18_STRPC - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsR PE=3 SV=1 RS18_STRPF - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 GN=rpsR PE=3 SV=1 gi\|15675656, gi\|... - gi\|15675656\|ref\|NP_269830.1\| 30S ribosomal protein S18 [Streptococcus pyogenes M1 GAS], gi\|13622868\|... RS18_STRS7 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsR PE=3 SV=1 RS18_STRP1 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M1 GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rpsR PE=3 SV=1 RS18_STRE4 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 GN=rpsR PE=3 SV=1 gi\|242391905, gi... - gi\|251783273\|ref\|YP_002997578.1\| 30S ribosomal protein S18 [Streptococcus dysgalactiae subsp. equisi... RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 GN=rpsR PE=3 SV=1 RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 GN=rpsR PE=3 SV=1 gi\|225869195, gi... - gi\|225869195\|ref\|YP_002745143.1\| 30S ribosomal protein S18 [Streptococcus equi subsp. zooepidemicus]... RS18_STRPQ - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rpsR PE=3 SV=1 RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... RS18_STREM - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsR PE=3... RS18_STRU0 - 30S ribosomal protein S18 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsR PE=3 SV=1 RS18_STRPD - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rpsR PE=3 SV=1 RS18_STRPY - (P66475) 30S ribosomal protein S18 gi\|71911366, gi\|... - gi\|71911366\|ref\|YP_282916.1\| 30S ribosomal protein S18 [Streptococcus pyogenes MGAS5005], gi\|7185414...	109.0	[0..1]	[78..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGRRGGRR RKKVCYFTSN GITHIDYKDV ELLKKFVSER GKILPRRVTG TSAKYQRKLT  60
   61 VAIKRSRQMA LLPFVAEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.74194835757561	bayes_pls_golite062009
structural molecule activity	3.45591847600399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: