YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121492206, gi...
Organism:	Mycobacterium bovis BCG str. Pasteur 1173P2
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121492206, gi....

Description	E-value	Query Range	Subject Range
gi\|41410208, gi\|... - gi\|41410208\|ref\|NP_963044.1\| preprotein translocase subunit SecE [Mycobacterium avium subsp. paratub...	154.0	[0..1]	[161..1]
SECE_MYCLE - Probable preprotein translocase subunit secE OS=Mycobacterium leprae GN=secE PE=3 SV=1 SECE_MYCLE - Protein translocase subunit SecE OS=Mycobacterium leprae (strain TN) GN=secE PE=3 SV=1 gi\|221230498, gi... - gi\|221230498\|ref\|YP_002503914.1\| SecE preprotein translocase [Mycobacterium leprae Br4923], gi\|21993...	146.0	[0..1]	[161..1]
gi\|145218180, gi... - gi\|89338460\|ref\|ZP_01191225.1\| SecE subunit of protein translocation complex [Mycobacterium flavesce...	123.0	[0..1]	[160..1]
gi\|92432232, gi\|... - gi\|92910144\|ref\|ZP_01278920.1\| SecE subunit of protein translocation complex [Mycobacterium sp. JLS]...	115.0	[0..1]	[161..61]
gi\|108797895, gi... - gi\|108797895\|ref\|YP_638092.1\| preprotein translocase subunit SecE [Mycobacterium sp. MCS], gi\|108768... gi\|119693079, gi... - gi\|92913608\|ref\|ZP_01282236.1\| SecE subunit of protein translocation complex [Mycobacterium sp. KMS]...	113.0	[0..1]	[161..1]
gi\|120402245, gi... - gi\|90202746\|ref\|ZP_01205392.1\| SecE subunit of protein translocation complex [Mycobacterium vanbaale...	113.0	[0..1]	[160..1]
SECE_STRGB - Protein translocase subunit SecE OS=Streptomyces galbus GN=secE PE=3 SV=1	106.0	[0..67]	[161..2]
gi\|38199303 - gi\|38199303\|emb\|CAE48934.1\| Putative translocase protein [Corynebacterium diphtheriae] gi\|38233044 - gi\|38233044\|ref\|NP_938811.1\| preprotein translocase subunit SecE [Corynebacterium diphtheriae NCTC 1...	102.0	[0..45]	[160..11]
gi\|849061, gi\|74... - gi\|849061\|dbj\|BAA09300.1\| SecE like protein [Streptomyces virginiae], gi\|7481911\|pir\|\|T11787 probabl...	92.0	[0..41]	[161..11]
gi\|75255008 - gi\|75255008\|ref\|ZP_00726929.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli E22]	88.0	[0..89]	[161..52]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEGDVADE AVADGAENAD SRGSGGRTAL VTKPVVRPQR PTGKRSRSRA AGADADVDVE  60
   61 EPSTAASEAT GVAKDDSTTK AVSKAAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKKASKPKAR SVNPIAFVYN YLKQVVAEMR KVIWPNRKQM LTYTSVVLAF LAFMVALVAG  60
   61 ADLGLTKLVM LVFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits