YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124501513, gi...
Organism:	Escherichia coli B
Length:	933 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124501513, gi....

Description	E-value	Query Range	Subject Range
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	995.0	[0..1]	[933..1]
gi\|193070663, gi... - gi\|75234496\|ref\|ZP_00718843.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	994.0	[0..1]	[933..1]
gi\|24111998, gi\|... - gi\|24111998\|ref\|NP_706508.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 301], gi\|2... gi\|30040356, gi\|... - gi\|30062111\|ref\|NP_836282.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 2457T], gi...	994.0	[0..1]	[933..1]
gi\|81240142, gi\|... - gi\|82775994\|ref\|YP_402341.1\| alpha-ketoglutarate decarboxylase [Shigella dysenteriae Sd197], gi\|8124...	993.0	[0..1]	[933..1]
gi\|43019 - gi\|43019\|emb\|CAA25280.1\| unnamed protein product [Escherichia coli] gi\|146201 - gi\|146201\|gb\|AAA23897.1\| 2-oxoglutarate dehydrogenase [Escherichia coli K12]	992.0	[0..1]	[933..1]
gi\|110804647, gi... - gi\|110804647\|ref\|YP_688167.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 5 str. 8401], gi\|...	991.0	[0..1]	[933..1]
gi\|15800430, gi\|... - gi\|15800430\|ref\|NP_286442.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 EDL933], gi... gi\|25284469 - gi\|25284469\|pir\|\|F85573 hypothetical protein sucA [imported] - Escherichia coli (strain O157:H7, su...	991.0	[0..1]	[933..1]
gi\|73854727, gi\|... - gi\|74311250\|ref\|YP_309669.1\| alpha-ketoglutarate decarboxylase [Shigella sonnei Ss046], gi\|73854727\|...	991.0	[0..1]	[933..1]
gi\|224467078, gi... - gi\|224582551\|ref\|YP_002636349.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|200389929, gi... - gi\|200389929\|ref\|ZP_03216540.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|194444060, gi... - gi\|194444060\|ref\|YP_002039973.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|62179310, gi\|... - gi\|62179310\|ref\|YP_215727.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|161615038, gi... - gi\|161615038\|ref\|YP_001589003.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enter...	984.0	[0..1]	[933..1]
gi\|194736068, gi... - gi\|194736068\|ref\|YP_002113842.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|197248575, gi... - gi\|197248575\|ref\|YP_002145694.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|197263411, gi... - gi\|197263411\|ref\|ZP_03163485.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|197940643, gi... - gi\|198246127\|ref\|YP_002214704.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|195629193, gi... - gi\|195629193\|gb\|EDX48561.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|168820136, gi... - gi\|205343267\|gb\|EDZ30031.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|194408385, gi... - gi\|194450081\|ref\|YP_002044766.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|194455071, gi... - gi\|194468707\|ref\|ZP_03074691.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|168230614, gi... - gi\|205334869\|gb\|EDZ21633.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|197288313, gi... - gi\|197288313\|gb\|EDY27694.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|205339879, gi... - gi\|205339879\|gb\|EDZ26643.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|168264339, gi... - gi\|205347149\|gb\|EDZ33780.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon... gi\|25284473, gi\|... - gi\|25284473\|pir\|\|AD0591 2-oxoglutarate dehydrogenase E1 component [imported] - Salmonella enterica s... gi\|29138183, gi\|... - gi\|29142552\|ref\|NP_805894.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|213999932 - gi\|213999932\|ref\|ZP_03410667.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enteri... gi\|16759675 - gi\|16759675\|ref\|NP_455292.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|204930041, gi... - gi\|204930041\|ref\|ZP_03221062.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|238911666 - gi\|238911666\|ref\|ZP_04655503.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enteri... gi\|207856180, gi... - gi\|207856180\|ref\|YP_002242831.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|213425385 - gi\|213425385\|ref\|ZP_03358135.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enteri... gi\|213851938 - gi\|213851938\|ref\|ZP_03381470.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enteri...	983.0	[0..1]	[933..1]

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Predicted Domain #1

Region A:
Residues: [1-933]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSALKAWL DSSYLSGANQ SWIEQLYEDF LTDPDSVDAN WRSTFQQLPG TGVKPDQFHS  60
   61 QTREYFRRLA KDASRYSSTI SDPDTNVKQV KVLQLINAYR FRGHQHANLD PLGLWQQDKV 120
  121 ADLDPSFHDL TEADFQETFN VGSFASGKET MKLGELLEAL KQTYCGPIGA EYMHITSTEE 180
  181 KRWIQQRIES GRATFNSEEK KRFLSELTAA EGLERYLGAK FPGAKRFSLE GGDALIPMLK 240
  241 EMIRHAGNSG TREVVLGMAH RGRLNVLVNV LGKKPQDLFD EFAGKHKEHL GTGDVKYHMG 300
  301 FSSDFQTDGG LVHLALAFNP SHLEIVSPVV IGSVRARLDR LDEPSSNKVL PITIHGDAAV 360
  361 TGQGVVQETL NMSKARGYEV GGTVRIVINN QVGFTTSNPL DARSTPYCTD IGKMVQAPIF 420
  421 HVNADDPEAV AFVTRLALDF RNTFKRDVFI DLVCYRRHGH NEADEPSATQ PLMYQKIKKH 480
  481 PTPRKIYADK LEQEKVATLE DATEMVNLYR DALDAGDCVV AEWRPMNMHS FTWSPYLNHE 540
  541 WDEEYPNKVE MKRLQELAKR ISTVPEAVEM QSRVAKIYGD RQAMAAGEKL FDWGGAENLA 600
  601 YATLVDEGIP VRLSGEDSGR GTFFHRHAVI HNQSNGSTYT PLQHIHNGQG AFRVWDSVLS 660
  661 EEAVLAFEYG YATAEPRTLT IWEAQFGDFA NGAQVVIDQF ISSGEQKWGR MCGLVMLLPH 720
  721 GYEGQGPEHS SARLERYLQL CAEQNMQVCV PSTPAQVYHM LRRQALRGMR RPLVVMSPKS 780
  781 LLRHPLAVSS LEELANGTFL PAIGEIDELD PKGVKRVVMC SGKVYYDLLE QRRKNNQHDV 840
  841 AIVRIEQLYP FPHKAMQEVL QQFAHVKDFV WCQEEPLNQG AWYCSQHHFR EVIPFGASLR 900
  901 YAGRPASASP AVGYMSVHQK QQQDLVNDAL NVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits