YRC Public Data Repository - Protein Structure Prediction

Protein:	RL13_BACHK
Organism:	Bacillus thuringiensis serovar konkukian
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL13_BACHK.

Description	E-value	Query Range	Subject Range
RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1 RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplM PE=3 SV=1	2.0E-56	[1..143]	[1..143]
gi\|224503610 - gi\|224503610\|ref\|ZP_03671917.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL R2-561] gi\|254854198 - gi\|254854198\|ref\|ZP_05243546.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL R2-503] RL13_LISMC - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rplM PE=3 SV=1 gi\|254877845 - gi\|254877845\|ref\|ZP_05250555.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-071] RL13_LISMC - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplM PE=3 SV=1 gi\|254825042 - gi\|254825042\|ref\|ZP_05230043.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-194] gi\|255025628 - gi\|255025628\|ref\|ZP_05297614.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-003] RL13_LISMF - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplM PE=3 SV=1 gi\|255029030 - gi\|255029030\|ref\|ZP_05300981.1\| 50S ribosomal protein L13 [Listeria monocytogenes LO28] RL13_LISMO - 50S ribosomal protein L13 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rp... gi\|126941782, gi... - gi\|254899952\|ref\|ZP_05259876.1\| 50S ribosomal protein L13 [Listeria monocytogenes J0161], gi\|1531856... RL13_LISMH - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplM PE=3 SV=1 gi\|254992718 - gi\|254992718\|ref\|ZP_05274908.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-064] RL13_LISMO - 50S ribosomal protein L13 OS=Listeria monocytogenes GN=rplM PE=3 SV=1 RL13_LISW6 - 50S ribosomal protein L13 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC533... gi\|224499269 - gi\|224499269\|ref\|ZP_03667618.1\| 50S ribosomal protein L13 [Listeria monocytogenes Finland 1988] gi\|255022864 - gi\|255022864\|ref\|ZP_05294850.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-208] gi\|254912842, gi... - gi\|254912842\|ref\|ZP_05262854.1\| 50S ribosomal protein L13 [Listeria monocytogenes J2818], gi\|1531923... gi\|153197625, gi... - gi\|254830972\|ref\|ZP_05235627.1\| 50S ribosomal protein L13 [Listeria monocytogenes 10403S], gi\|153197... gi\|133728615, gi... - gi\|254829046\|ref\|ZP_05233733.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL N3-165], gi\|15... gi\|255520578 - gi\|255520578\|ref\|ZP_05387815.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-175] gi\|254871299, gi... - gi\|254871299\|ref\|ZP_05244009.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL N1-017], gi\|15... gi\|153180761, gi... - gi\|254937222\|ref\|ZP_05268919.1\| 50S ribosomal protein L13 [Listeria monocytogenes F6900], gi\|1531807...	6.0E-56	[1..145]	[1..145]
gi\|47018097, gi\|... - gi\|47093537\|ref\|ZP_00231298.1\| ribosomal protein L13 [Listeria monocytogenes str. 4b H7858], gi\|4701... gi\|254931133, gi... - gi\|254931133\|ref\|ZP_05264492.1\| 50S ribosomal protein L13 [Listeria monocytogenes HPB2262], gi\|15320...	9.0E-56	[1..145]	[1..145]
gi\|221089355, gi... - gi\|221089355\|ref\|ZP_03558875.1\| ribosomal protein L13 [Geobacillus sp. Y412MC61], gi\|220706781\|gb\|EE... RL13_GEOKA - 50S ribosomal protein L13 OS=Geobacillus kaustophilus (strain HTA426) GN=rplM PE=3 SV=1 gi\|229500508, gi... - gi\|229500508\|ref\|ZP_04394169.1\| ribosomal protein L13 [Geobacillus sp. Y412MC52], gi\|229328625\|gb\|EE... RL13_GEOKA - 50S ribosomal protein L13 OS=Geobacillus kaustophilus GN=rplM PE=3 SV=1	1.0E-55	[1..145]	[1..145]
RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans GN=rplM PE=3 SV=1	1.0E-55	[1..145]	[1..145]
RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua GN=rplM PE=3 SV=1 RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rplM PE=3 SV=1	1.0E-55	[1..145]	[1..145]
gi\|26249811, gi\|... - gi\|26249811\|ref\|NP_755851.1\| 50S ribosomal protein L13 [Escherichia coli CFT073], gi\|26110239\|gb\|AAN... gi\|254038390, gi... - gi\|254038390\|ref\|ZP_04872448.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43], gi\|22684... gi\|24114518, gi\|... - ref\|NP_709028.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 2a str. 301], gb\|AAN44735.1\| ... gi\|91212650, gi\|... - gi\|91212650\|ref\|YP_542636.1\| 50S ribosomal subunit protein L13 [Escherichia coli UTI89], gi\|91074224... gi\|237706023, gi... - gi\|237706023\|ref\|ZP_04536504.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 3_2_53FAA], gi\|22...	6.0E-55	[3..143]	[27..167]
gi\|114773863, gi... - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255], ... gi\|114773863 - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255] gi\|221135443 - gi\|221135443\|ref\|ZP_03561746.1\| 50S ribosomal protein L13 [Glaciecola sp. HTCC2999]	1.0E-54	[3..143]	[2..142]
RL13_BACWK - 50S ribosomal protein L13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplM PE=3 SV=1 gi\|229131151, gi... - gi\|229131151\|ref\|ZP_04260063.1\| 50S ribosomal protein L13 [Bacillus cereus BDRD-ST196], gi\|228652364... gi\|228721407, gi... - gi\|229053989\|ref\|ZP_04195423.1\| 50S ribosomal protein L13 [Bacillus cereus AH603], gi\|228721407\|gb\|E...	2.0E-54	[1..145]	[1..145]
RL13_STAA2 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain JH1) GN=rplM PE=3 SV=1 RL13_STAA9 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain JH9) GN=rplM PE=3 SV=1 RL13_STAAR - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MRSA252) GN=rplM PE=3 SV=1 RL13_STAAE - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Newman) GN=rplM PE=3 SV=1 RL13_STAAS - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MSSA476) GN=rplM PE=3 SV=1 gi\|25295174 - pir\|\|E90018 50S ribosomal protein L13 [imported] - Staphylococcus aureus (strain N315) RL13_STAAW - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MW2) GN=rplM PE=3 SV=1 RL13_STAAC - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain COL) GN=rplM PE=3 SV=1 gi\|269203851\|ref... - 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus ED98] RL13_STAAM - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplM PE=3 SV=1 RL13_STAAN - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain N315) GN=rplM PE=1 SV=1 RL13_STAA1 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplM PE=3 SV=1 RL13_STAA8 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplM PE=1 SV=1 RL13_STAA3 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain USA300) GN=rplM PE=3 SV=1 gi\|221140180 - gi\|221140180\|ref\|ZP_03564673.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... RL13_STAAB - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplM PE=3 SV=1 gi\|221138920 - gi\|221138920\|ref\|ZP_03563721.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... RL13_STAAT - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplM PE=3 SV=1 gi\|87127142\|gb\|A... - 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA300], 50S ribosomal protein L13 [S... gi\|227556951, gi... - gi\|227556951\|ref\|ZP_03986998.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus MN8],... gi\|227899011, gi... - gi\|227899011\|ref\|ZP_04016816.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH60... gi\|251803128, gi... - gi\|251813355\|ref\|ZP_04827828.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH70... gi\|253316979 - gi\|253316979\|ref\|ZP_04840192.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... gi\|253729884, gi... - gi\|253729884\|ref\|ZP_04864049.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA30... gi\|253734373, gi... - gi\|253734373\|ref\|ZP_04868538.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH13... gi\|255006998 - gi\|255006998\|ref\|ZP_05145599.2\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus Mu50-...	3.0E-54	[1..145]	[1..145]

Back

Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTFMAKAN EVERKWYVVD AEGQTLGRLA SEVASILRGK NKPTFTPHVD TGDHVIIINA  60
   61 EKIHLTGNKL NDKIYYRHTN HPGGLKQRTA LEMRTNYPVQ MLELAIKGML PKGRLGRQVS 120
  121 KKLNVYAGAE HPHQAQKPEV YELRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	1p85H
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
nucleic acid binding	0.513360853458228	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: