YRC Public Data Repository - Protein Structure Prediction

Protein:	ISK1_RAT
Organism:	Rattus norvegicus
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISK1_RAT.

Description	E-value	Query Range	Subject Range
gi\|73978362 - gi\|73978362\|ref\|XP_539788.2\| PREDICTED: similar to Follistatin-related protein 5 precursor (Follista...	88.0	[0..10]	[79..31]
gi\|28376619, gi\|... - gi\|28376619\|ref\|NP_064501.1\| follistatin-like 5 [Homo sapiens], gi\|22209078\|gb\|AAH36502.1\| Follistat...	88.0	[0..10]	[79..65]
gi\|114596662 - gi\|114596662\|ref\|XP_517513.2\| PREDICTED: follistatin-like 5 isoform 2 [Pan troglodytes]	88.0	[0..10]	[79..65]
gi\|62643585, gi\|... - gi\|62643585\|ref\|XP_345224.2\| PREDICTED: similar to follistatin-like 5 [Rattus norvegicus], gi\|109466...	87.0	[0..10]	[79..65]
gi\|26349013 - gi\|26349013\|dbj\|BAC38146.1\| unnamed protein product [Mus musculus]	87.0	[0..10]	[79..65]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAIIFLLS ALALLSLAGN PPAEVNGKTP NCPKQIMGCP RIYDPVCGTN GITYPSECSL  60
   61 CFENRKFGTS IHIQRRGTC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	1yu6C
Description:	Crystal Structure of the Subtilisin Carlsberg:OMTKY3 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits