YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121548873, gi...
Organism:	Vibrio cholerae 2740-80
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121548873, gi....

Description	E-value	Query Range	Subject Range
gi\|91223574, gi\|... - gi\|91223574\|ref\|ZP_01258839.1\| heme exporter protein D [Vibrio alginolyticus 12G01], gi\|91191660\|gb\|... gi\|75854961, gi\|... - gi\|75854961\|ref\|ZP_00762628.1\| COG3114: Heme exporter protein D [Vibrio sp. Ex25], gi\|116184395\|ref\|...	102.0	[0..1]	[68..1]
gi\|28807213 - gi\|28807213\|dbj\|BAC60483.1\| heme exporter protein D [Vibrio parahaemolyticus RIMD 2210633] gi\|28898994, gi\|... - gi\|28898994\|ref\|NP_798599.1\| heme exporter protein D [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|153836998, gi... - gi\|153836998\|ref\|ZP_01989665.1\| conserved domain protein [Vibrio parahaemolyticus AQ3810], gi\|149749...	101.0	[0..1]	[68..1]
gi\|37680636, gi\|... - gi\|37680636\|ref\|NP_935245.1\| heme exporter protein D [Vibrio vulnificus YJ016], gi\|37199384\|dbj\|BAC9...	100.0	[0..1]	[68..1]
gi\|218708853, gi... - gi\|218708853\|ref\|YP_002416474.1\| Cytochrome c-type biogenesis protein ccmD (Heme exporter protein D)... gi\|86146107, gi\|... - gi\|86146107\|ref\|ZP_01064433.1\| heme exporter protein D [Vibrio sp. MED222], gi\|85836054\|gb\|EAQ54186....	100.0	[0..1]	[68..1]
gi\|84388140, gi\|... - gi\|84388140\|ref\|ZP_00991036.1\| heme exporter protein D [Vibrio splendidus 12B01], gi\|84377207\|gb\|EAP...	99.0	[0..1]	[68..1]
gi\|75822835, gi\|... - gi\|75822835\|ref\|ZP_00752394.1\| COG3114: Heme exporter protein D [Vibrio cholerae RC385], gi\|11621606... tr\|D7HAA6\|D7HAA6... - Heme exporter protein D OS=Vibrio cholerae RC385 GN=VCRC385_02301 PE=4 SV=1	95.0	[0..1]	[68..1]
gi\|148828254, gi... - gi\|148828254\|ref\|YP_001293007.1\| heme exporter protein D [Haemophilus influenzae PittGG], gi\|1487194... gi\|148716454, gi... - gi\|148826294\|ref\|YP_001291047.1\| heme exporter protein D [Haemophilus influenzae PittEE], gi\|1487164... gi\|68057848, gi\|... - gi\|68249649\|ref\|YP_248761.1\| heme exporter protein D [Haemophilus influenzae 86-028NP], gi\|68057848\|... gi\|145638094, gi... - gi\|145638094\|ref\|ZP_01793704.1\| heme exporter protein D [Haemophilus influenzae PittII], gi\|14527242... gi\|145634250, gi... - gi\|145634250\|ref\|ZP_01789961.1\| heme exporter protein D [Haemophilus influenzae PittAA], gi\|14526869... gi\|144979718, gi... - gi\|145627943\|ref\|ZP_01783744.1\| heme exporter protein D [Haemophilus influenzae 22.1-21], gi\|1449797... gi\|229811128, gi... - gi\|229846124\|ref\|ZP_04466236.1\| heme exporter protein D [Haemophilus influenzae 7P49H1], gi\|22981112...	91.0	[0..1]	[68..1]
CCMD_HAEIN - Heme exporter protein D OS=Haemophilus influenzae GN=ccmD PE=3 SV=1 CCMD_HAEIN - Heme exporter protein D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ccm...	91.0	[0..1]	[68..1]
gi\|119946642, gi... - gi\|119946642\|ref\|YP_944322.1\| Heme exporter protein D (CcmD) [Psychromonas ingrahamii 37], gi\|119865...	90.0	[0..1]	[68..1]
gi\|12720207, gi\|... - gi\|15601873\|ref\|NP_244945.1\| CcmD [Pasteurella multocida subsp. multocida str. Pm70], gi\|12720207\|gb...	88.0	[0..1]	[65..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFDSFSDFL AMGGYAAYVW SAFGLTYLSM AMLWIVSVRR KTKLLNQVRD KLARQARIDA  60
   61 AKHMENTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits