YRC Public Data Repository - Protein Structure Prediction

Protein:	PRMA_BACAH
Organism:	Bacillus thuringiensis str. Al Hakam
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRMA_BACAH.

Description	E-value	Query Range	Subject Range
gi\|89208405, gi\|... - gi\|89208405\|ref\|ZP_01186914.1\| Ribosomal protein L11 methyltransferase [Bacillus weihenstephanensis ... gi\|228648314, gi... - gi\|229135137\|ref\|ZP_04263938.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST196]...	1.0E-64	[1..312]	[1..312]
gi\|228799093, gi... - gi\|228960580\|ref\|ZP_04122228.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|229129592, gi... - gi\|229129592\|ref\|ZP_04258561.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4],... PRMA_BACCR - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|229152514, gi... - gi\|229152514\|ref\|ZP_04280705.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550], gi\|... PRMA_BACC4 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain B4264) GN=prmA PE=3 SV=1	5.0E-64	[1..312]	[1..312]
gi\|47555554, gi\|... - gi\|47567877\|ref\|ZP_00238585.1\| ribosomal protein L11 methyltransferase [Bacillus cereus G9241], gi\|4...	1.0E-63	[1..312]	[1..312]
PRMA_BACC1 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=prmA PE=...	6.0E-63	[1..312]	[1..312]
gi\|2634991, gi\|1... - gi\|2634991\|emb\|CAB14487.1\| yqeT [Bacillus subtilis subsp. subtilis str. 168], gi\|16079599\|ref\|NP_390... PRMA_BACSU - Ribosomal protein L11 methyltransferase OS=Bacillus subtilis GN=prmA PE=3 SV=1	1.0E-62	[1..311]	[1..311]
PRMA_BACLD - Ribosomal protein L11 methyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM ...	2.0E-62	[1..311]	[1..311]
gi\|89084796, gi\|... - gi\|89100453\|ref\|ZP_01173315.1\| ribosomal protein L11 methyltransferase [Bacillus sp. NRRL B-14911], ...	3.0E-62	[1..311]	[1..311]
PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans GN=prmA PE=3 SV=1 PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FE...	7.0E-61	[1..311]	[1..310]
PRMA_OCEIH - Ribosomal protein L11 methyltransferase OS=Oceanobacillus iheyensis GN=prmA PE=3 SV=1 PRMA_OCEIH - Ribosomal protein L11 methyltransferase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / ...	8.0E-61	[1..311]	[1..311]
PRMA_GEOKA - Ribosomal protein L11 methyltransferase OS=Geobacillus kaustophilus GN=prmA PE=3 SV=1 PRMA_GEOKA - Ribosomal protein L11 methyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=prmA PE=3 SV=...	3.0E-59	[1..311]	[1..311]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWSEISIHT TEEAVEAVSH ILHEAGASGV AIEDPAELTK EREQQYGEIY ALNPDEYPAE  60
   61 GVLIKAYFPQ TD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.610	c.47.1	Thioredoxin-like
View	Download	0.558	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.533	d.58.8	Viral DNA-binding domain
View	Download	0.547	c.47.1	Thioredoxin-like
View	Download	0.541	c.47.1	Thioredoxin-like

Predicted Domain #2

Region A:
Residues: [73-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLHETIAGVK SSIDVLPSYD IEIGTGNITV NEVNEEDWAT AWKKYYHPVQ ISDTFTIVPT  60
   61 WEEYTPSSPE EKIIELDPGM AFGTGTHPTT TMCIRALEKT VQPGDTIIDV GTGSGVLSIA 120
  121 AAKLGASSVQ AYDLDPVAVE SAEMNVRLNK TDDVVSVGQN SLLEGIEGPV DLIVANLLAE 180
  181 IILLFPEDAA RVVKSGGLFI TSGIIAAKEK VISEALEKAG FTIEEVLRME DWVAIIARNA 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1ufkA
Description:	Crystal structure of TT0836
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-adenosylmethionine-dependent methyltransferase activity	4.81722723955895	bayes_pls_golite062009
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
protein methyltransferase activity	3.85056781737182	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
rRNA methyltransferase activity	2.44443043670156	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
histone methyltransferase activity	2.40337598041915	bayes_pls_golite062009
arginine N-methyltransferase activity	2.25021293330454	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	2.25021293330454	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.49701653866454	bayes_pls_golite062009
RNA methyltransferase activity	1.36067005317038	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	1.16693241506234	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.70686255278148	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.64299622477655	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.42556595268413	bayes_pls_golite062009
O-methyltransferase activity	0.32686871890222	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.32546946538886	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: