YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121638848, gi...
Organism:	Mycobacterium bovis BCG str. Pasteur 1173P2
Length:	1127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121638848, gi....

Description	E-value	Query Range	Subject Range
gi\|228654461, gi... - gi\|229129224\|ref\|ZP_04258197.1\| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4], gi\|228654461\|gb\|EE... gi\|229111417, gi... - gi\|229111417\|ref\|ZP_04240969.1\| Pyruvate carboxylase [Bacillus cereus Rock1-15], gi\|228672033\|gb\|EEL... gi\|228702243, gi... - gi\|229081199\|ref\|ZP_04213709.1\| Pyruvate carboxylase [Bacillus cereus Rock4-2], gi\|228702243\|gb\|EEL5... gi\|228723709, gi... - gi\|229047633\|ref\|ZP_04193221.1\| Pyruvate carboxylase [Bacillus cereus AH676], gi\|228723709\|gb\|EEL750... gi\|30022035, gi\|... - gi\|30022035\|ref\|NP_833666.1\| pyruvate carboxylase [Bacillus cereus ATCC 14579], gi\|29897591\|gb\|AAP10... gi\|229146518, gi... - gi\|229146518\|ref\|ZP_04274889.1\| Pyruvate carboxylase [Bacillus cereus BDRD-ST24], gi\|228637151\|gb\|EE...	1078.0	[0..2]	[1126..7]
gi\|51975010, gi\|... - gi\|52141541\|ref\|YP_085288.1\| pyruvate carboxylase [Bacillus cereus E33L], gi\|51975010\|gb\|AAU16560.1\|...	1078.0	[0..2]	[1126..7]
gi\|47557102, gi\|... - gi\|47565822\|ref\|ZP_00236861.1\| pyruvate carboxylase [Bacillus cereus G9241], gi\|47557102\|gb\|EAL15431...	1077.0	[0..2]	[1126..7]
gi\|49330018, gi\|... - gi\|49478462\|ref\|YP_038009.1\| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str. 97-...	1077.0	[0..2]	[1126..7]
gi\|42783042, gi\|... - gi\|42783042\|ref\|NP_980289.1\| pyruvate carboxylase [Bacillus cereus ATCC 10987], gi\|42738969\|gb\|AAS42...	1076.0	[0..2]	[1126..7]
gi\|89202981, gi\|... - gi\|89202981\|ref\|ZP_01181683.1\| Pyruvate carboxylase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	1074.0	[0..2]	[1126..7]
gi\|56419614, gi\|... - gi\|56419614\|ref\|YP_146932.1\| pyruvate carboxylase [Geobacillus kaustophilus HTA426], gi\|56379456\|dbj...	1073.0	[0..2]	[1127..6]
gi\|49180784, gi\|... - gi\|49186857\|ref\|YP_030109.1\| pyruvate carboxylase [Bacillus anthracis str. Sterne], gi\|49180784\|gb\|A... gi\|47504603, gi\|... - gi\|47529455\|ref\|YP_020804.1\| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4750... gi\|30258663, gi\|... - gi\|30264018\|ref\|NP_846395.1\| pyruvate carboxylase [Bacillus anthracis str. Ames], gi\|30258663\|gb\|AAP... gi\|65321343, gi\|... - gi\|65321343\|ref\|ZP_00394302.1\| COG1038: Pyruvate carboxylase [Bacillus anthracis str. A2012], ref\|NP... gi\|165872192, gi... - gi\|165872192\|ref\|ZP_02216831.1\| pyruvate carboxylase [Bacillus anthracis str. A0488], gi\|164712139\|g... gi\|170129416, gi... - gi\|170705876\|ref\|ZP_02896339.1\| pyruvate carboxylase [Bacillus anthracis str. A0389], gi\|170129416\|g... gi\|167511066, gi... - gi\|167641016\|ref\|ZP_02399273.1\| pyruvate carboxylase [Bacillus anthracis str. A0193], gi\|167511066\|g... gi\|190563041, gi... - gi\|190566122\|ref\|ZP_03019041.1\| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I], gi\|1905630... gi\|177654299, gi... - gi\|177654299\|ref\|ZP_02936228.1\| pyruvate carboxylase [Bacillus anthracis str. A0174], gi\|172080789\|g... gi\|227816721, gi... - gi\|227816721\|ref\|YP_002816730.1\| pyruvate carboxylase [Bacillus anthracis str. CDC 684], gi\|22700485... gi\|229601337, gi... - gi\|229601337\|ref\|YP_002868247.1\| pyruvate carboxylase [Bacillus anthracis str. A0248], gi\|229265745\|... gi\|254736059 - gi\|254736059\|ref\|ZP_05193765.1\| pyruvate carboxylase [Bacillus anthracis str. Western North America ... gi\|254754271 - gi\|254754271\|ref\|ZP_05206306.1\| pyruvate carboxylase [Bacillus anthracis str. Vollum] gi\|254758038 - gi\|254758038\|ref\|ZP_05210065.1\| pyruvate carboxylase [Bacillus anthracis str. Australia 94]	1072.0	[0..2]	[1126..7]
gi\|163863883, gi... - gi\|89206387\|ref\|ZP_01184946.1\| Pyruvate carboxylase [Bacillus weihenstephanensis KBAB4], gi\|89155649...	1072.0	[0..2]	[1126..7]
PYC_BACSU - Pyruvate carboxylase OS=Bacillus subtilis GN=pyc PE=2 SV=1 PYC_BACSU - Pyruvate carboxylase OS=Bacillus subtilis (strain 168) GN=pyc PE=3 SV=1 gi\|221322879 - gi\|221322879\|ref\|ZP_03604173.1\| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221313683 - gi\|221313683\|ref\|ZP_03595488.1\| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. NCIB 36... gi\|221318605 - gi\|221318605\|ref\|ZP_03599899.1\| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. JH642]	1066.0	[0..2]	[1126..6]

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Predicted Domain #1

Region A:
Residues: [1-1127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKVLVANR GEIAIRAFRA AYELGVGTVA VYPYEDRNSQ HRLKADESYQ IGDIGHPVHA  60
   61 YLSVDEIVAT ARRAGADAIY PGYGFLSENP DLAAACAAAG ISFVGPSAEV LELAGNKSRA 120
  121 IAAAREAGLP VLMSSAPSAS VDELLSVAAG MPFPLFVKAV AGGGGRGMRR VGDIAALPEA 180
  181 IEAASREAES AFGDPTVYLE QAVINPRHIE VQILADNLGD VIHLYERDCS VQRRHQKVIE 240
  241 LAPAPHLDAE LRYKMCVDAV AFARHIGYSC AGTVEFLLDE RGEYVFIEMN PRVQVEHTVT 300
  301 EEITDVDLVA SQLRIAAGET LEQLGLRQED IAPHGAALQC RITTEDPANG FRPDTGRISA 360
  361 LRTAGGAGVR LDGSTNLGAE ISPYFDSMLV KLTCRGRDLP TAVSRARRAI AEFRIRGVST 420
  421 NIPFLQAVLD DPDFRAGRVT TSFIDERPQL LTARASADRG TKILNFLADV TVNNPYGSRP 480
  481 STIYPDDKLP DLDLRAAPPA GSKQRLVKLG PEGFARWLRE SAAVGVTDTT FRDAHQSLLA 540
  541 TRVRTSGLSR VAPYLARTMP QLLSVECWGG ATYDVALRFL KEDPWERLAT LRAAMPNICL 600
  601 QMLLRGRNTV GYTPYPEIVT SAFVQEATAT GIDIFRIFDA LNNIESMRPA IDAVRETGSA 660
  661 IAEVAMCYTG DLTDPGEQLY TLDYYLKLAE QIVDAGAHVL AIKDMAGLLR PPAAQRLVSA 720
  721 LRSRFDLPVH LHTHDTPGGQ LASYVAAWHA GADAVDGAAA PLAGTTSQPA LSSIVAAAAH 780
  781 TEYDTGLSLS AVCALEPYWE ALRKVYAPFE SGLPGPTGRV YHHEIPGGQL SNLRQQAIAL 840
  841 GLGDRFEEIE EAYAGADRVL GRLVKVTPTS KVVGDLALAL VGAGVSADEF ASDPARFGIP 900
  901 ESVLGFLRGE LGDPPGGWPE PLRTAALAGR GAARPTAQLA ADDEIALSSV GAKRQATLNR 960
  961 LLFPSPTKEF NEHREAYGDT SQLSANQFFY GLRQGEEHRV KLERGVELLI GLEAISEPDE1020
 1021 RGMRTVMCIL NGQLRPVLVR DRSIASAVPA AEKADRGNPG HIAAPFAGVV TVGVCVGERV1080
 1081 GAGQTIATIE AMKMEAPITA PVAGTVERVA VSDTAQVEGG DLLVVVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qf7A
Description:	No description for 2qf7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits