YRC Public Data Repository - Protein Structure Prediction

Protein:	RS26_RAT
Organism:	Rattus norvegicus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS26_RAT.

Description	E-value	Query Range	Subject Range
gi\|38566094, gi\|... - gi\|41053335\|ref\|NP_956319.1\| ribosomal protein S26 [Danio rerio], gi\|38566094\|gb\|AAH62287.1\| Ribosom...	207.0	[0..1]	[115..1]
gi\|15294065 - gi\|15294065\|gb\|AAK95209.1\|AF402835_1 40S ribosomal protein S26-2 [Ictalurus punctatus]	206.0	[0..1]	[115..1]
gi\|109478147 - gi\|109478147\|ref\|XP_216698.3\| PREDICTED: similar to 40S ribosomal protein S26 [Rattus norvegicus]	206.0	[0..4]	[108..102]
gi\|114621444, gi... - gi\|55631132\|ref\|XP_519920.1\| PREDICTED: similar to 40S ribosomal protein S26-2 isoform 2 [Pan troglo...	205.0	[0..1]	[115..1]
gi\|50416640, gi\|... - gi\|52346158\|ref\|NP_001005121.1\| ribosomal protein S26 [Xenopus (Silurana) tropicalis], gi\|50416640\|g...	201.0	[0..1]	[115..1]
gi\|61826195 - gi\|61826195\|ref\|XP_601973.1\| PREDICTED: similar to 40S ribosomal protein S26 [Bos taurus]	201.0	[0..1]	[115..1]
gi\|47229575 - gi\|47229575\|emb\|CAG06771.1\| unnamed protein product [Tetraodon nigroviridis]	201.0	[0..2]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKRRNNGR AKKGRGHVQP IRCTNCARCV PKDKAIKKFV IRNIVEAAAV RDISEASVFD  60
   61 AYVLPKLYVK LHYCVSCAIH SKVVRNRSRE ARKDRTPPPR FRPAGAAPRP PPKPM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.552842
Match:	PF01283.10
Description:	No description for PF01283.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits