YRC Public Data Repository - Protein Structure Prediction

Protein:	PEA15_RAT
Organism:	Rattus norvegicus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEA15_RAT.

Description	E-value	Query Range	Subject Range
gi\|119590646, gi... - gi\|2429154\|gb\|AAB70909.1\| FLAME-1 [Homo sapiens], gi\|119590646\|gb\|EAW70240.1\| CASP8 and FADD-like ap...	157.0	[0..1]	[119..90]
gi\|114582587 - gi\|114582587\|ref\|XP_001171792.1\| PREDICTED: CASP8 and FADD-like apoptosis regulator isoform 8 [Pan t...	157.0	[0..1]	[119..90]
CFLAR_PONPY - CASP8 and FADD-like apoptosis regulator precursor [Contains: CASP8 and FADD-like apoptosis regulator... CFLAR_PONAB - CASP8 and FADD-like apoptosis regulator OS=Pongo abelii GN=CFLAR PE=2 SV=1	148.0	[0..1]	[113..90]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEYGTLLQD LTNNITLEDL EQLKSACKED IPSEKSEEIT TGSAWFSFLE SHNKLDKDNL  60
   61 SYIEHIFEIS RRPDLLTMVV DYRTRVLKIS EEDELDTKLT RIPSAKKYKD IIRQPSEEEI 120
  121 IKLAPPPKKA

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Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1n3kA
Description:	PEA-15 (phosphoprotein enriched in astrocytes 15 kDa)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits