YRC Public Data Repository - Protein Structure Prediction

Protein:	DPM2_RAT
Organism:	Rattus norvegicus
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPM2_RAT.

Description	E-value	Query Range	Subject Range
gi\|50757410 - gi\|50757410\|ref\|XP_415511.1\| PREDICTED: similar to RIKEN cDNA C230093N12 [Gallus gallus]	150.0	[0..1]	[83..531]
gi\|88181693, gi\|... - gi\|88181693\|gb\|EAQ89161.1\| hypothetical protein CHGG_05780 [Chaetomium globosum CBS 148.51], gi\|1161...	126.0	[0..6]	[78..105]
DPM2_BOVIN - Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3	116.0	[0..1]	[84..1]
gi\|125816302, gi... - gi\|62531211\|gb\|AAH93353.1\| Dpm2 protein [Danio rerio], gi\|170932542\|ref\|NP_001116318.1\| dolichyl-pho...	112.0	[0..1]	[81..1]
gi\|62858779, gi\|... - gi\|62858779\|ref\|NP_001016297.1\| dolichyl-phosphate mannosyltransferase 2 [Xenopus (Silurana) tropica...	111.0	[0..1]	[84..1]
gi\|73968174 - gi\|73968174\|ref\|XP_851419.1\| PREDICTED: similar to phosphatidylinositol-4-phosphate 5-kinase-like 1 ...	110.0	[0..2]	[73..133]
DPM2_CRIGR - Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus GN=DPM2 PE=3 SV=3	103.0	[0..1]	[84..1]
gi\|54261480 - gi\|54261480\|gb\|AAH84411.1\| LOC495274 protein [Xenopus laevis]	102.0	[0..1]	[84..1]
gi\|197692359, gi... - gi\|81294280\|gb\|AAI07864.1\| Dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit ...	101.0	[0..1]	[84..1]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGTDQAVG FGLVAVSLII FTYYTTWVIL LPFIDSQHVI HKYFLPRAYA VLLPLAAGLL  60
   61 LLLFVGLFIT YVLLKSQKVT KKAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.366532
Match:	PF07297.3
Description:	No description for PF07297.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.825	N/A	N/A	a.151.1	Glutamyl tRNA-reductase dimerization domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits