YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA8_MOUSE
Organism:	Mus musculus
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA8_MOUSE.

Description	E-value	Query Range	Subject Range
NDUFA8 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa gi\|111662288 - gi\|111662288\|gb\|ABH12233.1\| mitochondrial complex I subunit NDUFA8 [Gorilla gorilla] NDUA8_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pan troglodytes GN=NDUFA8 PE=2 SV=3 NDUA8_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Gorilla gorilla gorilla GN=NDUFA8 PE...	302.0	[0..1]	[171..1]
NDUA8_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1 NDUA8_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo abelii GN=NDUFA8 PE=2 SV=1	301.0	[0..1]	[171..1]
NDUA8_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos taurus GN=NDUFA8 PE=1 SV=2	299.0	[0..1]	[172..1]
gi\|109110347 - gi\|109110347\|ref\|XP_001089493.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subco...	297.0	[0..1]	[171..1]
gi\|57092131 - gi\|57092131\|ref\|XP_537861.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	294.0	[0..1]	[172..1]
gi\|68367134, gi\|... - gi\|68367134\|ref\|XP_688659.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	285.0	[0..1]	[171..1]
gi\|114145517, gi... - gi\|33086512\|gb\|AAP92568.1\| Aa2-258 [Rattus norvegicus], gi\|114145517\|ref\|NP_001041327.1\| NADH dehydr...	282.0	[0..17]	[172..34]
gi\|77748497, gi\|... - gi\|77748497\|gb\|AAI06588.1\| MGC131357 protein [Xenopus laevis], gi\|148236073\|ref\|NP_001089798.1\| hypo...	275.0	[0..1]	[171..1]
gi\|47223721 - gi\|47223721\|emb\|CAF99330.1\| unnamed protein product [Tetraodon nigroviridis]	267.0	[0..1]	[170..1]
gi\|50757139 - gi\|50757139\|ref\|XP_415397.1\| PREDICTED: similar to LIM homeobox protein 6 isoform 1; LIM homeodomain...	267.0	[0..17]	[171..1005]

Back

Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGIVELPTL EELKVEEVKV SSAVLKAAAH HYGAQCDKTN KEFMLCRWEE KDPRRCLKEG  60
   61 KLVNGCALNF FRQIKSHCAE PFTEYWTCLD YSNMQLFRHC RQQQAKFDQC VLDKLGWVRP 120
  121 DLGQLSKVTK VKTDRPLPEN PYHSRARPEP NPVIEGDLKP AKHGTRFFFW TV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits