YRC Public Data Repository - Protein Structure Prediction

Protein:	STMN1_MOUSE
Organism:	Mus musculus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STMN1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|108999807 - gi\|108999807\|ref\|XP_001114361.1\| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19) (Oncopro...	207.0	[0..1]	[149..260]
gi\|50745196 - gi\|50745196\|ref\|XP_420017.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) [Gall...	193.0	[0..3]	[145..150]
gi\|73992751 - gi\|73992751\|ref\|XP_534480.2\| PREDICTED: similar to Stathmin 3 (SCG10-like protein) (SCG10-related pr...	161.0	[0..5]	[144..143]
gi\|12850126 - gi\|12850126\|dbj\|BAB28602.1\| unnamed protein product [Mus musculus]	146.0	[0..5]	[140..39]
gi\|148704047 - gi\|148704047\|gb\|EDL35994.1\| stathmin-like 4, isoform CRA_b [Mus musculus] gi\|149030331, gi... - ref\|XP_341342.1\| stathmin-like-protein RB3 [Rattus norvegicus], gi\|2585995\|gb\|AAC95063.1\| stathmin-...	145.0	[0..3]	[145..74]
gi\|109085958 - gi\|109085958\|ref\|XP_001108715.1\| PREDICTED: stathmin-like 4 isoform 1 [Macaca mulatta] gi\|119583967, gi... - gi\|21361947\|ref\|NP_110422.2\| stathmin-like 4 [Homo sapiens], gi\|15079350\|gb\|AAH11520.1\| Stathmin-lik... gi\|123995087, gi... - gi\|123995087\|gb\|ABM85145.1\| stathmin-like 4 [synthetic construct], gi\|123980274\|gb\|ABM81966.1\| stath...	144.0	[0..3]	[145..74]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDIQVKE LEKRASGQAF ELILSPRSKE SVPDFPLSPP KKKDLSLEEI QKKLEAAEER  60
   61 RKSHEAEVLK QLAEKREHEK EVLQKAIEEN NNFSKMAEEK LTHKMEANKE NREAQMAAKL 120
  121 ERLREKDKHV EEVRKNKESK DPADETEAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1sa1E
Description:	TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tubulin binding	3.65496915008945	bayes_pls_golite062009
cytoskeletal protein binding	2.89666448608274	bayes_pls_golite062009
microtubule binding	2.64117962157109	bayes_pls_golite062009
protein binding	2.51615225301602	bayes_pls_golite062009
binding	2.01491607652085	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: