YRC Public Data Repository - Protein Structure Prediction

Protein:	ATIF1_MOUSE
Organism:	Mus musculus
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATIF1_MOUSE.

Description	E-value	Query Range	Subject Range
ATIF1_MOUSE, IAT... - (O35143) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial OS=Mus musculus ...	133.0	[0..1]	[106..1]
ATIF1_RAT - ATPase inhibitor, mitochondrial OS=Rattus norvegicus GN=Atpif1 PE=3 SV=2	128.0	[0..1]	[105..1]
ATPIF1 - ATPase inhibitory factor 1 gi\|60654607, gi\|... - gi\|60654609\|gb\|AAX31869.1\| ATPase inhibitory factor 1 [synthetic construct], gi\|60654607\|gb\|AAX31868... ATIF1_PONAB - ATPase inhibitor, mitochondrial OS=Pongo abelii GN=ATPIF1 PE=3 SV=1 ATIF1_PONPY - ATPase inhibitor, mitochondrial precursor - Pongo pygmaeus (Orangutan) gi\|55586611 - gi\|55586611\|ref\|XP_513253.1\| PREDICTED: ATPase inhibitory factor 1 [Pan troglodytes]	126.0	[0..1]	[105..1]
CCDS319.1_1 - null gi\|109000135 - gi\|109000135\|ref\|XP_001113002.1\| PREDICTED: ATPase inhibitory factor 1 [Macaca mulatta]	126.0	[0..1]	[105..1]
gi\|73950105, gi\|... - gi\|73950105\|ref\|XP_865710.1\| PREDICTED: similar to ATPase inhibitor, mitochondrial precursor isoform...	117.0	[0..1]	[105..1]
IATP_PIG, ATIF1_PIG - (Q29307) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial precursor - Sus ...	110.0	[0..1]	[105..1]
ATIF1_BOVIN - ATPase inhibitor, mitochondrial OS=Bos taurus GN=ATPIF1 PE=1 SV=2	107.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSALAVRA RFGVWGMKVL QTRGFVSDSS DSMDTGAGSI REAGGAFGKR EKAEEDRYFR  60
   61 EKTKEQLAAL RKHHEDEIDH HSKEIERLQK QIERHKKKIQ QLKNNH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1gmjA
Description:	F1 ATPase inhibitor, IF1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits