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View Structure Prediction Details

Protein: RT26_MOUSE
Organism: Mus musculus
Length: 200 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT26_MOUSE.

Description E-value Query
Range
Subject
Range
GL50803_4883 - | organism=Giardia_Assemblage_A_isolate_WB | product=hypothetical protein | location=GLCHR02:216520-...
gi|157433633, gi... - gi|71078504|ref|XP_771761.1| hypothetical protein GLP_546_74871_79250 [Giardia lamblia ATCC 50803], ...
ctg02_33|4883|Hy... - protein
154.0 [0..15] [182..383]
RT26_RAT - 28S ribosomal protein S26, mitochondrial OS=Rattus norvegicus GN=Mrps26 PE=1 SV=1
147.0 [0..1] [200..1]
MYO7A_MOUSE, MY7... - Myosin-VIIa OS=Mus musculus GN=Myo7a PE=1 SV=1, (P97479) Myosin VIIa
142.0 [0..54] [193..804]
gi|109108048 - gi|109108048|ref|XP_001087868.1| PREDICTED: similar to myosin VIIA [Macaca mulatta]
137.0 [0..54] [193..835]
MYO7A - myosin VIIA
134.0 [0..54] [193..804]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRALNRLAA RPETRPPTPL LLPVRGRKTR HDPPAKSKVG RVQTPPAVDP AEFFVLTERY  60
   61 RQYRETVRAL RLEFTLEVRR KLHEARAGVL AERKAQQAIT EHRELMAWNR DENRRMQELR 120
  121 IARLQLEAQA QEVQKAEAQA QRAQEEQAWV QLKEQEVLKL QEEAKNFITR ENLEARIEEA 180
  181 LDSPKSYNWA VTKEGQVVRN 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.4
Match: 1rh1A
Description: crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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