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View Structure Prediction Details

Protein: gi|26346639, gi|...
Organism: Mus musculus
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26346639, gi|....

Description E-value Query
Range		 Subject
Range
MTNB_MOUSE - Methylthioribulose-1-phosphate dehydratase OS=Mus musculus GN=Apip PE=1 SV=1
 259.0 [0..1] [241..1]
gi|109470291, gi... - gi|27702700|ref|XP_215785.1| PREDICTED: similar to APAF1 interacting protein [Rattus norvegicus], gi...
 253.0 [0..1] [241..1]
gi|114636956 - gi|114636956|ref|XP_508364.2| PREDICTED: APAF1 interacting protein isoform 4 [Pan troglodytes]
APIP - APAF1 interacting protein
 250.0 [0..1] [241..1]
gi|14250071 - gi|14250071|gb|AAH08440.1| APAF1 interacting protein [Homo sapiens]
 249.0 [0..1] [241..1]
MTNB_XENTR - Methylthioribulose-1-phosphate dehydratase OS=Xenopus tropicalis GN=apip PE=2 SV=1
 242.0 [0..7] [241..5]
MTNB_XENLA - Methylthioribulose-1-phosphate dehydratase OS=Xenopus laevis GN=apip PE=2 SV=1
 240.0 [0..7] [241..5]
MTNB_BOVIN - Methylthioribulose-1-phosphate dehydratase OS=Bos taurus GN=APIP PE=2 SV=1
 239.0 [0..1] [241..1]

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Predicted Domain #1
Region A:
Residues: [1-241] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGCQAQGDC SSRPCGAQDK EHPRFLIPEL CKQFYHLGWV TGTGGGISLK HGNEIYIAPS  60
   61 GVQKERIQPE DMFVCDINEQ DISGPPASKK LKKSQCTPLF MNAYTMRGAG AVIHTHSKAA 120
  121 VMATLLFPGQ EFKITHQEMI KGIRKCTSGG YYRYDDMLVV PIIENTPEEK DLKERMAHAM 180
  181 NEYPDSCAVL VRRHGVYVWG ETWEKAKTMC ECYDYLFDIA VSMKKMGLDP TQLPVGENGI 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.69897
Match: 1jdiA
Description: L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.89539096965643 bayes_pls_golite062009
catalytic activity 1.58067730905989 bayes_pls_golite062009
protein binding 0.401574215469404 bayes_pls_golite062009
lyase activity 0.114082266751758 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle