YRC Public Data Repository - Protein Structure Prediction

Protein:	GALP_MOUSE
Organism:	Mus musculus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALP_MOUSE.

Description	E-value	Query Range	Subject Range
GALP_RAT - Galanin-like peptide OS=Rattus norvegicus GN=Galp PE=3 SV=1	220.0	[0..1]	[114..1]
HGNC:24840\|MIM:6... - peptide GALP - galanin-like peptide gi\|151555123, gi... - gi\|151555123\|gb\|AAI48723.1\| Galanin-like peptide [synthetic construct], gi\|146327238\|gb\|AAI41469.1\| ...	191.0	[0..18]	[115..19]
gi\|109126180 - gi\|109126180\|ref\|XP_001090902.1\| PREDICTED: similar to galanin-like peptide precursor [Macaca mulatt... GALP_MACNE - Galanin-like peptide OS=Macaca nemestrina GN=GALP PE=2 SV=1	190.0	[0..18]	[115..18]
gi\|114679247 - gi\|114679247\|ref\|XP_524495.2\| PREDICTED: similar to galanin-like peptide precursor [Pan troglodytes]	188.0	[0..18]	[115..19]
GALP_PIG - Galanin-like peptide OS=Sus scrofa GN=GALP PE=1 SV=1	172.0	[0..1]	[97..1]
gi\|73947395 - gi\|73947395\|ref\|XP_853936.1\| PREDICTED: similar to zinc finger protein 444 [Canis familiaris]	135.0	[0..19]	[105..383]
gi\|16945957 - gi\|16945957\|gb\|AAL32205.1\|AF426450_1 galanin-like peptide [Mus musculus]	105.0	[0..11]	[65..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSVHLVLF LTILLSLAET PESAPAHRGR GGWTLNSAGY LLGPVLPVSS KADQGRKRDS  60
   61 ALEILDLWKI IDGLPYSHSP RMTKRTMGET FVKANTGDMH ILDKNVPKEE ATLDSES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.437	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.362	a.23.4	Mitochondrial import receptor subunit Tom20
View	Download	0.357	a.77.1	DEATH domain
View	Download	0.356	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.345	a.83.1	Guanido kinase N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits