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View Structure Prediction Details

Protein: GHRL_MOUSE
Organism: Mus musculus
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GHRL_MOUSE.

Description E-value Query
Range
Subject
Range
gi|27357900 - gi|27357900|gb|AAO06965.1|AF442491_1 ghrelin preproprotein [Meriones unguiculatus]
175.0 [0..1] [117..1]
GHRL_FELCA - Appetite-regulating hormone OS=Felis catus GN=GHRL PE=1 SV=1
173.0 [0..1] [117..1]
GHRL_CANLF - Appetite-regulating hormone OS=Canis lupus familiaris GN=GHRL PE=3 SV=1
170.0 [0..1] [117..1]
gi|34014150 - gi|34014150|gb|AAQ56122.1| preproghrelin [Anser sp.]
164.0 [0..1] [116..1]
gi|34014154 - gi|34014154|gb|AAQ56124.1| preproghrelin [Dromaius novaehollandiae]
161.0 [0..1] [113..1]
gi|13603381 - gi|13603381|gb|AAK30002.1| preproghrelin des14Q [Sus scrofa]
161.0 [0..1] [117..1]
gi|34014152 - gi|34014152|gb|AAQ56123.1| preproghrelin [Anas platyrhynchos]
159.0 [0..1] [116..1]
GHRL - ghrelin/obestatin prepropeptide
153.0 [0..1] [117..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSGTICSL LLLSMLWMDM AMAGSSFLSP EHQKAQQRKE SKKPPAKLQP RALEGWLHPE  60
   61 DRGQAEETEE ELEIRFNAPF DVGIKLSGAQ YQQHGRALGK FLQDILWEEV KEAPADK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.086186
Match: PF04643.3
Description: No description for PF04643.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle