YRC Public Data Repository - Protein Structure Prediction

Protein:	PFD6_MOUSE
Organism:	Mus musculus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFD6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|89348180 - gi\|89348180\|gb\|ABD72216.1\| CTTNBP2 [Homo sapiens]	106.0	[0..2]	[120..132]
CTTB2_PLEMO - Cortactin-binding protein 2 OS=Plecturocebus moloch GN=CTTNBP2 PE=3 SV=1	104.0	[0..2]	[120..132]
CTTB2_CHLAE - Cortactin-binding protein 2 OS=Chlorocebus aethiops GN=CTTNBP2 PE=3 SV=1	104.0	[0..2]	[120..132]
CTTB2_GORGO - Cortactin-binding protein 2 OS=Gorilla gorilla gorilla GN=CTTNBP2 PE=3 SV=1	104.0	[0..2]	[120..132]
CTTB2_SAIBB - Cortactin-binding protein 2 OS=Saimiri boliviensis boliviensis GN=CTTNBP2 PE=3 SV=1	103.0	[0..2]	[120..132]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELIQKKLQ GEVEKYQQLQ KDLSKSMSGR QKLEAQLTEN NIVKEELALL DGSNVVFKLL  60
   61 GPVLVKQELG EARATVGKRL DYITAEIKRY ESQLRDLERQ SEQQRETLAQ LQQEFQRAQA 120
  121 AKAPGKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits