YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUAD_MOUSE
Organism:	Mus musculus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUAD_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12005918, gi\|... - gi\|21361822\|ref\|NP_057049.3\| cell death-regulatory protein GRIM19 [Homo sapiens], gi\|12005918\|gb\|AAG...	257.0	[0..1]	[144..84]
gi\|111662445 - gi\|111662445\|gb\|ABH12254.1\| mitochondrial complex I subunit Grim19 [Gorilla gorilla] NDUAD_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 ...	249.0	[0..1]	[144..1]
NDUAD_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=...	248.0	[0..1]	[143..1]
NDUAD_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2...	245.0	[0..1]	[144..20]
NDUAD_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3 NDUAD_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo abelii GN=NDUFA13 PE=2 SV=3	244.0	[0..1]	[144..1]
gi\|57101296 - gi\|57101296\|ref\|XP_533863.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase B16.6 subunit (Com...	243.0	[0..1]	[144..1]
NDUAD_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3	240.0	[0..1]	[144..1]
gi\|38181972, gi\|... - gi\|45360491\|ref\|NP_988900.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 [Xenopus (Silura...	237.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASKVKQDM PPPGGYGPID YKRNLPRRGL SGYSMFAVGI GALIFGYWRM MRWNQERRRL  60
   61 LIEDLEARIA LMPLFQAEKD RRTLQILREN LEEEAIIMKD VPNWKVGESV FHTTRWVPPL 120
  121 IGEMYGLRTK EEMSNANFGF TWYT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	81.013228
Match:	PF06212.3
Description:	No description for PF06212.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.809	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits