YRC Public Data Repository - Protein Structure Prediction

Protein:	SBDS_MOUSE
Organism:	Mus musculus
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBDS_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|47221046 - gi\|47221046\|emb\|CAG12740.1\| unnamed protein product [Tetraodon nigroviridis]	345.0	[0..1]	[249..1]
SBDS_RAT - Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	345.0	[0..1]	[250..1]
SBDS_BOVIN - Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1	342.0	[0..1]	[250..1]
SBDS_PONPY - Shwachman-Bodian-Diamond syndrome protein homolog - Pongo pygmaeus (Orangutan) gi\|114613780, gi... - gi\|114613780\|ref\|XP_001141242.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114... SBDS - Shwachman-Bodian-Diamond syndrome SBDS_PONAB - Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1	340.0	[0..1]	[250..1]
SBDS_XENTR - Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1	339.0	[0..1]	[250..1]
SBDS_CHICK - Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1	335.0	[0..1]	[250..1]
gi\|48129273 - gi\|48129273\|ref\|XP_396646.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Apis m...	333.0	[0..3]	[250..7]
gi\|73957623 - gi\|73957623\|ref\|XP_848632.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Canis ...	330.0	[0..1]	[250..1]
gi\|119112438, gi... - gi\|119112438\|ref\|XP_317609.3\| AGAP007882-PA [Anopheles gambiae str. PEST], gi\|116123353\|gb\|EAA12796.... AGAP007882-PA - Ribosome maturation protein SBDS\|protein_coding\|3R:2464384:2465145:-1\|gene:AGAP007882	323.0	[0..3]	[250..4]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFTPTNQI RLTNVAVVRM KRGGKRFEIA CYKNKVVGWR SGVEKDLDEV LQTHSVFVNV  60
   61 SKGQVAKKED LISAFGTDDQ TEICKQILTK GEVQVSDKER HTQLEQMFRD IATIVADKCV 120
  121 NPETKRPYTV ILIERAMKDI HYSVKPNKST KQQALEVIKQ LKEKMKIERA HMRLRFILPV 180
  181 NEGKKLKEKL KPLMKVVESE DYSQQLEIVC LIDPGCFREI DELIKKETKG RGSLEVLSLK 240
  241 DVEEGDEKFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.522879
Match:	1p9qC
Description:	Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits