YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SBDS_MOUSE
Organism: Mus musculus
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBDS_MOUSE.

Description E-value Query
Range
Subject
Range
gi|47221046 - gi|47221046|emb|CAG12740.1| unnamed protein product [Tetraodon nigroviridis]
345.0 [0..1] [249..1]
SBDS_RAT - Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1
345.0 [0..1] [250..1]
SBDS_BOVIN - Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1
342.0 [0..1] [250..1]
SBDS_PONPY - Shwachman-Bodian-Diamond syndrome protein homolog - Pongo pygmaeus (Orangutan)
gi|114613780, gi... - gi|114613780|ref|XP_001141242.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi|114...
SBDS - Shwachman-Bodian-Diamond syndrome
SBDS_PONAB - Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1
340.0 [0..1] [250..1]
SBDS_XENTR - Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1
339.0 [0..1] [250..1]
SBDS_CHICK - Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1
335.0 [0..1] [250..1]
gi|48129273 - gi|48129273|ref|XP_396646.1| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Apis m...
333.0 [0..3] [250..7]
gi|73957623 - gi|73957623|ref|XP_848632.1| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Canis ...
330.0 [0..1] [250..1]
gi|119112438, gi... - gi|119112438|ref|XP_317609.3| AGAP007882-PA [Anopheles gambiae str. PEST], gi|116123353|gb|EAA12796....
AGAP007882-PA - Ribosome maturation protein SBDS|protein_coding|3R:2464384:2465145:-1|gene:AGAP007882
323.0 [0..3] [250..4]

Back

Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFTPTNQI RLTNVAVVRM KRGGKRFEIA CYKNKVVGWR SGVEKDLDEV LQTHSVFVNV  60
   61 SKGQVAKKED LISAFGTDDQ TEICKQILTK GEVQVSDKER HTQLEQMFRD IATIVADKCV 120
  121 NPETKRPYTV ILIERAMKDI HYSVKPNKST KQQALEVIKQ LKEKMKIERA HMRLRFILPV 180
  181 NEGKKLKEKL KPLMKVVESE DYSQQLEIVC LIDPGCFREI DELIKKETKG RGSLEVLSLK 240
  241 DVEEGDEKFE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.522879
Match: 1p9qC
Description: Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle