YRC Public Data Repository - Protein Structure Prediction

Protein:	AKAP7_MOUSE
Organism:	Mus musculus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AKAP7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50806943 - gi\|50806943\|ref\|XP_424536.1\| PREDICTED: similar to A-kinase anchor protein 7 isoform gamma (Protein ...	145.0	[0..1]	[79..1018]
gi\|49257489, gi\|... - gi\|83405633\|gb\|AAI10898.1\| A kinase (PRKA) anchor protein 7 [Homo sapiens], gi\|63100300\|gb\|AAH94732.... ENSPTRT00000034344 - null	132.0	[0..1]	[81..1]
gi\|109072709 - gi\|109072709\|ref\|XP_001103953.1\| PREDICTED: A-kinase anchor protein 7 [Macaca mulatta]	130.0	[0..16]	[81..261]
gi\|109460543 - gi\|109460543\|ref\|XP_001053676.1\| PREDICTED: similar to A-kinase anchoring protein 18 ,isoform delta ...	127.0	[0..16]	[81..239]
gi\|114609389 - gi\|114609389\|ref\|XP_518739.2\| PREDICTED: similar to A-kinase anchoring protein 18 gamma [Pan troglod...	127.0	[0..16]	[81..283]
gi\|76626051 - gi\|76626051\|ref\|XP_869646.1\| PREDICTED: similar to A-kinase anchor protein 7 isoform gamma (Protein ...	123.0	[0..16]	[80..287]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQLCCFPFA REEGKICEKD RKEPEDAELV RLSKRLVENA VLKAVQQYLE ETQNKKQPGE  60
   61 GNSVKAEEGD RNGDGSDNNR K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.507	a.164.1	C-terminal domain of DFF45/ICAD (DFF-C domain)
View	Download	0.428	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.416	a.4.1	Homeodomain-like
View	Download	0.379	a.21.1	HMG-box
View	Download	0.353	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.286	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.265	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.245	a.4.1	Homeodomain-like
View	Download	0.239	a.16.1	S15/NS1 RNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits