YRC Public Data Repository - Protein Structure Prediction

Protein:	CDO1_MOUSE
Organism:	Mus musculus
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDO1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|2498271, gi\|4... - gi\|467561\|emb\|CAA83234.1\| cysteine dioxygenase type 1 [Homo sapiens], ref\|NP_001792.1\| cysteine diox...	282.0	[0..1]	[200..1]
gi\|109078270, gi... - gi\|109078272\|ref\|XP_001085951.1\| PREDICTED: similar to cysteine dioxygenase, type I isoform 2 [Macac... gi\|90077114 - gi\|90077114\|dbj\|BAE88237.1\| unnamed protein product [Macaca fascicularis]	281.0	[0..1]	[200..1]
gi\|62901886 - gi\|62901886\|gb\|AAY18894.1\| cysteine dioxygenase [synthetic construct]	278.0	[0..2]	[200..26]
gi\|57093453 - gi\|57093453\|ref\|XP_531867.1\| PREDICTED: similar to Cysteine dioxygenase type I (CDO) (CDO-I) [Canis ...	275.0	[0..1]	[200..1]
gi\|47125499 - gi\|47125499\|gb\|AAH70509.1\| Cysteine dioxygenase, type I [Rattus norvegicus]	274.0	[0..1]	[200..1]
gi\|38051875, gi\|... - gi\|38051875\|gb\|AAH60414.1\| MGC68656 protein [Xenopus laevis], gi\|147904302\|ref\|NP_001083506.1\| hypot...	273.0	[0..1]	[200..1]
gi\|89270946, gi\|... - gi\|89270946\|emb\|CAJ81896.1\| cysteine dioxygenase type I [Xenopus tropicalis], gi\|45360991\|ref\|NP_989...	273.0	[0..1]	[200..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERTELLKPR TLADLIRILH ELFAGDEVNV EEVQAVLEAY ESNPAEWALY AKFDQYRYTR  60
   61 NLVDQGNGKF NLMILCWGEG HGSSIHDHTD SHCFLKLLQG NLKETLFDWP DKKSNEMIKK 120
  121 SERTLRENQC AYINDSIGLH RVENVSHTEP AVSLHLYSPP FDTCHAFDQR TGHKNKVTMT 180
  181 FHSKFGIRTP FTTSGSLENN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.045757
Match:	2ic1A
Description:	No description for 2ic1A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.79942166158385	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	1.78958805205885	bayes_pls_golite062009
dioxygenase activity	0.855730327285165	bayes_pls_golite062009
binding	0.469306358852266	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009
protein binding	0.133891883527478	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: