YRC Public Data Repository - Protein Structure Prediction

Protein:	FKBP2_MOUSE
Organism:	Mus musculus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FKBP2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109463454, gi... - gi\|62641808\|ref\|XP_215196.2\| PREDICTED: similar to FK506-binding protein 2 precursor (Peptidyl-proly...	174.0	[0..1]	[140..51]
gi\|73983269 - gi\|73983269\|ref\|XP_853295.1\| PREDICTED: similar to FK506-binding protein 2 precursor (Peptidyl-proly...	170.0	[0..1]	[140..22]
gi\|74188310 - gi\|74188310\|dbj\|BAE25814.1\| unnamed protein product [Mus musculus]	169.0	[0..1]	[140..1]
FKBP2_BOVIN - Peptidyl-prolyl cis-trans isomerase FKBP2 OS=Bos taurus GN=FKBP2 PE=2 SV=1	167.0	[0..1]	[140..1]
gi\|123994911, gi... - gi\|60655019\|gb\|AAX32073.1\| FK506 binding protein 2 [synthetic construct], gi\|60655017\|gb\|AAX32072.1\|... FKBP2 - FK506 binding protein 2, 13kDa	164.0	[0..1]	[140..1]
gi\|109105593, gi... - gi\|109105595\|ref\|XP_001115137.1\| PREDICTED: similar to FK506-binding protein 2 precursor isoform 2 [...	163.0	[0..1]	[140..1]
gi\|114638287 - gi\|114638287\|ref\|XP_001164246.1\| PREDICTED: FK506-binding protein 2 [Pan troglodytes]	162.0	[0..1]	[140..1]
gi\|80479228, gi\|... - gi\|80479228\|gb\|AAI08495.1\| MGC53657 protein [Xenopus laevis], gi\|27694894\|gb\|AAH43844.1\| MGC53657 pr...	161.0	[0..4]	[140..8]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSWILTIL SICLSALAAA TGAEGKRKLQ IGVKKRVDHC PIKSRKGDVL HMHYTGKLED  60
   61 GTEFDSSLPQ NQPFVFSLGT GQVIKGWDQG LLGMCEGEKR KLVIPSELGY GERGAPPKIP 120
  121 GGATLVFEVE LLKIERRSEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2pbcA
Description:	No description for 2pbcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits