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View Structure Prediction Details

Protein: COLI_MOUSE
Organism: Mus musculus
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COLI_MOUSE.

Description E-value Query
Range
Subject
Range
COLI1_XENLA - Pro-opiomelanocortin A OS=Xenopus laevis GN=pomc-a PE=1 SV=2
355.0 [0..1] [235..1]
COLI_PELRI - Pro-opiomelanocortin OS=Pelophylax ridibundus GN=pomc PE=2 SV=1
355.0 [0..1] [235..1]
gi|56789305, gi|... - gi|58332486|ref|NP_001011318.1| proopiomelanocortin [Xenopus (Silurana) tropicalis], gi|56789305|gb|...
355.0 [0..1] [235..1]
gi|4455031 - gi|4455031|gb|AAD21040.1| proopiomelanocortin [Spea multiplicata]
349.0 [0..1] [235..1]
gi|5915914 - gi|5915914|gb|AAD55816.1|AF092937_1 proopiomelanocortin A precursor [Acipenser transmontanus]
345.0 [0..1] [235..1]
gi|53854820 - gi|53854820|gb|AAU95754.1| proopiomelanocortin [Bombina orientalis]
344.0 [0..1] [235..1]
gi|5257216 - gi|5257216|gb|AAD41263.1|AF117302_1 proopiomelanocortin A [Polyodon spathula]
343.0 [0..1] [235..1]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFCYSRSG ALLLALLLQT SIDVWSWCLE SSQCQDLTTE SNLLACIRAC KLDLSLETPV  60
   61 FPG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGDEQPLTEN PRKYVMGHFR WDRFGPRNSS SAGSAAQRRA EEEAVWGDGS PEPSPREGKR  60
   61 SYSMEHFRWG KPVGKKRRPV KVYPNVAENE SAEAFPLEFK RELEGERPLG LEQVLESDAE 120
  121 KDDGPYRVEH FRWSNPPKDK RYGGFMTSEK SQTPLVTLFK NAIIKNAHKK GQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle