YRC Public Data Repository - Protein Structure Prediction

Protein:	PROSC_MOUSE
Organism:	Mus musculus
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROSC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149057846, gi... - gi\|62662820\|ref\|XP_224947.3\| PREDICTED: similar to Proline synthetase co-transcribed bacterial homol...	251.0	[0..1]	[272..1]
gi\|190689559, gi... - gi\|190690923\|gb\|ACE87236.1\| proline synthetase co-transcribed homolog (bacterial) protein [synthetic... PROSC - proline synthetase co-transcribed homolog (bacterial)	249.0	[0..1]	[274..1]
gi\|114619663, gi... - gi\|114619663\|ref\|XP_001169823.1\| PREDICTED: proline synthetase co-transcribed homolog isoform 1 [Pan...	249.0	[0..1]	[274..1]
gi\|109086147 - gi\|109086147\|ref\|XP_001089087.1\| PREDICTED: proline synthetase co-transcribed homolog [Macaca mulatt...	247.0	[0..1]	[274..1]
PROSC_PONAB - Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 PROSC_PONPY - Proline synthetase co-transcribed bacterial homolog protein - Pongo pygmaeus (Orangutan)	245.0	[0..1]	[274..1]
gi\|57097863 - gi\|57097863\|ref\|XP_539969.1\| PREDICTED: similar to Proline synthetase co-transcribed bacterial homol...	240.0	[0..1]	[274..1]
PROSC_BOVIN - Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1	231.0	[0..1]	[274..1]
gi\|153839183, gi... - gi\|153839183\|ref\|ZP_01991850.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28807626, gi\|... - gi\|28899390\|ref\|NP_798995.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633], gi\|28807626\|dbj\|BAC60879.1... gi\|28807626 - gi\|28807626\|dbj\|BAC60879.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633]	219.0	[0..12]	[257..3]
gi\|91228687, gi\|... - gi\|91228687\|ref\|ZP_01262601.1\| FkuA [Vibrio alginolyticus 12G01], gi\|91187758\|gb\|EAS74076.1\| FkuA [V...	214.0	[0..12]	[253..3]
Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1 Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1	214.0	[0..11]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGGSMTAE LGVGFALRAV NERVQQSVAR RPRDLPAIQP RLVAVSKTKP ADMVIEAYGH  60
   61 GQRTFGENYV QELLEKASNP KILSSCPEIK WHFIGHLQKQ NVNKLMAVPN LSMLETVDSV 120
  121 KLADKVNSSW QKKGPTEPLK VMVQINTSGE DSKHGLLPSE TIAVVEHIKA SCPSLEFVGL 180
  181 MTIGSFGHDL SQGPNPDFQR LLTLRRELCE KLGIPVEQVE LSMGMSMDFQ HAIEVGSTNV 240
  241 RIGSTIFGER DYSKKPALDK TADAKASVPL VQGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1w8gA
Description:	No description for 1w8gA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits