YRC Public Data Repository - Protein Structure Prediction

Protein:	VAMP5_MOUSE
Organism:	Mus musculus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAMP5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	132.0	[0..4]	[87..132]
VA727_ARATH - Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1	121.0	[0..5]	[97..149]
gi\|194125183, gi... - gi\|195333067\|ref\|XP_002033213.1\| GM20541 [Drosophila sechellia], gi\|194125183\|gb\|EDW47226.1\| GM20541... Syb-PC - The gene Synaptobrevin is referred to in FlyBase by the symbol Dmel\Syb (CG12210, FBgn0003660). It i...	117.0	[0..2]	[90..44]
gi\|55276718 - gi\|55276718\|gb\|AAV49990.1\| putative synaptobrevin/VAMP [Hordeum vulgare subsp. vulgare]	117.0	[0..5]	[86..125]
gi\|73955677 - gi\|73955677\|ref\|XP_536630.2\| PREDICTED: similar to Vesicle-associated membrane protein 2 (VAMP-2) (S...	116.0	[0..2]	[75..115]
gi\|12851438 - gi\|12851438\|dbj\|BAB29042.1\| unnamed protein product [Mus musculus]	116.0	[0..2]	[74..30]
gi\|29840934 - gi\|29840934\|gb\|AAP05935.1\| SJCHGC01984 protein [Schistosoma japonicum]	115.0	[0..3]	[96..22]
gi\|50752072 - gi\|50752072\|ref\|XP_422640.1\| PREDICTED: similar to vesicle associated membrane protein VAMP-2 [Gallu...	115.0	[0..2]	[79..26]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKELKQCQ QQADEVTEIM LNNFDKVLER HGKLAELEQR SDQLLDMSSA FSKTTKTLAQ  60
   61 QKRWENIRCR VYLGLAVAVG LLIILIVLLV VFLPSGGDSS KP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits