YRC Public Data Repository - Protein Structure Prediction

Protein:	PPR17_MOUSE
Organism:	Mus musculus
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR17_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73976574 - gi\|73976574\|ref\|XP_539505.2\| PREDICTED: similar to G substrate [Canis familiaris]	311.0	[0..5]	[159..1125]
gi\|23334557, gi\|... - gi\|23618881\|ref\|NP_703197.1\| G substrate [Rattus norvegicus], gi\|23334557\|gb\|AAN27914.1\|AF294688_1 G...	301.0	[0..1]	[159..1]
gi\|114612717 - gi\|114612717\|ref\|XP_001166815.1\| PREDICTED: hypothetical protein [Pan troglodytes] gi\|6102675, gi\|2... - gi\|6102675\|gb\|AAF03537.1\|AC006325_1 unknown [Homo sapiens], gi\|51105857\|gb\|EAL24441.1\| chromosome 7 ...	289.0	[0..5]	[159..1]
C7orf16 - chromosome 7 open reading frame 16	288.0	[0..5]	[159..1]
gi\|109066957 - gi\|109066957\|ref\|XP_001083835.1\| PREDICTED: similar to G-substrate [Macaca mulatta]	284.0	[0..5]	[159..1]
gi\|126722928, gi... - gi\|37955168\|gb\|AAP76222.1\| G-substrate [Oryctolagus cuniculus], gi\|126722928\|ref\|NP_001075624.1\| G-s...	271.0	[0..5]	[159..1]
gi\|76668377, gi\|... - gi\|76668377\|ref\|XP_874069.1\| PREDICTED: similar to G-substrate [Bos taurus], gi\|194666332\|ref\|XP_874...	269.0	[0..5]	[159..1]
gi\|50732972 - gi\|50732972\|ref\|XP_418851.1\| PREDICTED: similar to G-substrate [Gallus gallus]	177.0	[0..5]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEMMTTEP VPPLELSDDI LGKLDPQCSP SDDLSDQFIK DCDLKKKPRK GKNVQATLNV  60
   61 ESDQKKPRRK DTPAVHIPPF IPGVISEHLI KRYDVQERIP KAKSGPALHN SDMEQKRPRR 120
  121 KDTPALHMPP FVAGLTLLRD ESAGVILEDE EMDGDKLAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits