| Protein: | MBD3_MOUSE |
| Organism: | Mus musculus |
| Length: | 285 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD3_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
461.0 | [0..1] | [267..1] |
|
|
460.0 | [0..1] | [267..1] |
|
|
454.0 | [0..1] | [267..1] |
|
|
443.0 | [0..1] | [260..1] |
|
|
443.0 | [0..1] | [262..1] |
|
|
441.0 | [0..1] | [270..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MERKRWECPA LPQGWEREEV PRRSGLSAGH RDVFYYSPSG KKFRSKPQLA RYLGGSMDLS 60
61 TFDFRTGKML MNKMNK
|
| Detection Method: |  |
| Confidence: | 24.69897 |
| Match: | 1d9nA |
| Description: | Methylation-dependent transcriptional repressor MBD1/PCM1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [77-215] |
1 11 21 31 41 51
| | | | | |
1 SRQRVRYDSS NQVKGKPDLN TALPVRQTAS IFKQPVTKIT NHPSNKVKSD PQKAVDQPRQ 60
61 LFWEKKLSGL SAFDIAEELV RTMDLPKGLQ GVGPGCTDET LLSAIASALH TSTLPITGQL 120
121 SAAVEKNPGV WLNTAQPLC
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.387 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.380 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.369 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.349 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.347 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.323 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.246 | N/A | N/A | a.74.1 | Cyclin-like |
|
Region A: Residues: [216-285] |
1 11 21 31 41 51
| | | | | |
1 KAFMVTDDDI RKQEELVQQV RKRLEEALMA DMLAHVEELA RDGEAPLDKA CAEEEEEEEE 60
61 EEEEPEPERV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.678 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.665 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.612 | a.4.1 | Homeodomain-like |
| View | Download | 0.600 | a.4.1 | Homeodomain-like |
| View | Download | 0.470 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.463 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.459 | a.4.1 | Homeodomain-like |
| View | Download | 0.434 | a.4.1 | Homeodomain-like |
| View | Download | 0.419 | a.144.1 | PABC (PABP) domain |
