YRC Public Data Repository - Protein Structure Prediction

Protein:	RGR_MOUSE
Organism:	Mus musculus
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGR_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73987082 - gi\|73987082\|ref\|XP_542105.2\| PREDICTED: similar to olfactory receptor Olr1121 [Canis familiaris]	277.0	[0..2]	[283..8]
gi\|114675243 - gi\|114675243\|ref\|XP_001149960.1\| PREDICTED: similar to Zinc finger protein 699 [Pan troglodytes]	276.0	[0..3]	[283..371]
gi\|76624576 - gi\|76624576\|ref\|XP_872866.1\| PREDICTED: similar to olfactory receptor Olr834, partial [Bos taurus]	249.0	[0..3]	[286..38]

Back

Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATRALPAG LGELEVLAVG TVLLMEALSG ISLNGLTIFS FCKTPDLRTP SNLLVLSLAL  60
   61 ADTGISLNAL VAAVSSLLRR WPHGSEGCQV HGFQGFATAL ASICGSAAVA WGRYHHYCTR 120
  121 RQLAWDTAIP LVLFVWMSSA FWASLPLMGW GHYDYEPVGT CCTLDYSRGD RNFISFLFTM 180
  181 AFFNFLVPLF ITHTSYRFME QKFSRSGHLP VNTTLPGRML LLGWGPYALL YLYAAIADVS 240
  241 FISPKLQMVP ALIAKTMPTI NAINYALHRE MVCRGTWQCL SPQKSKKDRT Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits