YRC Public Data Repository - Protein Structure Prediction

Protein:	KR121_MOUSE
Organism:	Mus musculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KR121_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109491840 - gi\|109491840\|ref\|XP_001081426.1\| PREDICTED: similar to keratin associated protein 4-7 [Rattus norveg...	152.0	[0..1]	[130..1]
gi\|94390799, gi\|... - gi\|94391983\|ref\|XP_985957.1\| PREDICTED: hypothetical protein LOC68768 [Mus musculus], gi\|94390799\|re...	144.0	[0..5]	[130..40]
gi\|114667485 - gi\|114667485\|ref\|XP_523642.2\| PREDICTED: similar to keratin associated protein 4.3 [Pan troglodytes]	139.0	[0..5]	[130..45]
KRTAP4-3 - keratin associated protein 4-3	132.0	[0..7]	[130..42]
gi\|2136964, gi\|5... - gi\|510541\|emb\|CAA56339.1\| cysteine rich hair keratin associated protein [Oryctolagus cuniculus], pir...	127.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHTSCSSGC QPSCCVSSSC QPSCCVSSPC QASCFVSSPC QPSCCVSSSC QSACCRPAIC  60
   61 IPVRYQVACC VPVSCGPTVC MAPSCQSSVC VPVSCRPVCV TSSCQSSGCC QPSCPTLVCK 120
  121 PVTCSNPSCC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.06
Match:	2gttW
Description:	No description for 2gttW was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits