YRC Public Data Repository - Protein Structure Prediction

Protein:	PLM_MOUSE
Organism:	Mus musculus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLM_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73947952, gi\|... - gi\|73947952\|ref\|XP_867931.1\| PREDICTED: similar to phospholemman precursor isoform 4 [Canis familiar...	159.0	[0..1]	[92..1]
gi\|1916010 - gi\|1916010\|gb\|AAC51286.1\| phospholemman chloride channel [Homo sapiens]	158.0	[0..1]	[92..1]
PLM_BOVIN - Phospholemman OS=Bos taurus GN=FXYD1 PE=3 SV=1	153.0	[0..1]	[92..1]
PLM_RAT - Phospholemman OS=Rattus norvegicus GN=Fxyd1 PE=1 SV=2	136.0	[0..1]	[92..1]
gi\|51980374 - gb\|AAH82201.1\| Unknown (protein for MGC:98775) [Xenopus laevis] gi\|12834828, gi\|... - gi\|29835140\|gb\|AAH51127.1\| FXYD domain-containing ion transport regulator 6 [Mus musculus], gi\|15216...	121.0	[0..7]	[84..4]
FXYD6_MACFA - FXYD domain-containing ion transport regulator 6 OS=Macaca fascicularis GN=FXYD6 PE=3 SV=1	120.0	[0..7]	[84..5]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPGHILAL CVCLLSMASA EAPQEPDPFT YDYHTLRIGG LTIAGILFIL GILIILSKRC  60
   61 RCKFNQQQRT GEPDEEEGTF RSSIRRLSSR RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits