YRC Public Data Repository - Protein Structure Prediction

Protein:	PX11A_MOUSE
Organism:	Mus musculus
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PX11A_MOUSE.

Description	E-value	Query Range	Subject Range
PX11A_RAT - Peroxisomal membrane protein 11A OS=Rattus norvegicus GN=Pex11a PE=1 SV=1	276.0	[0..1]	[246..1]
gi\|60835489 - gi\|60835489\|gb\|AAX37141.1\| peroxisomal biogenesis factor 11A [synthetic construct]	276.0	[0..1]	[246..1]
PEX11A - peroxisomal biogenesis factor 11 alpha gi\|157928610, gi... - gi\|60823999\|gb\|AAX36664.1\| peroxisomal biogenesis factor 11A [synthetic construct], gi\|157928610\|gb\|...	275.0	[0..1]	[246..1]
gi\|55642619 - gi\|55642619\|ref\|XP_510585.1\| PREDICTED: peroxisomal biogenesis factor 11A [Pan troglodytes]	275.0	[0..1]	[246..1]
gi\|73951475 - gi\|73951475\|ref\|XP_545854.2\| PREDICTED: similar to peroxisomal biogenesis factor 11A [Canis familiar...	263.0	[0..1]	[244..1]
gi\|74143577 - gi\|74143577\|dbj\|BAE28847.1\| unnamed protein product [Mus musculus]	261.0	[0..1]	[242..1]
gi\|109082324 - gi\|109082324\|ref\|XP_001093381.1\| PREDICTED: similar to peroxisomal biogenesis factor 11A [Macaca mul...	261.0	[0..1]	[246..1]
PX11A_BOVIN - Peroxisomal membrane protein 11A OS=Bos taurus GN=PEX11A PE=2 SV=1	248.0	[0..1]	[246..1]
gi\|37590287, gi\|... - gi\|37590287\|gb\|AAH59330.1\| MGC69071 protein [Xenopus laevis], gi\|147903439\|ref\|NP_001080024.1\| hypot...	244.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFIRVANQ SQGRDRLFRA TQHACMLLRY LLESKADKEA VVLKLKRLET SVSTGRKWFR  60
   61 LGNVFHAIQA TEQSIQAADL APRLCLTLAN LNRVVYYICD TVLWAKSVGL TSGVNREKWQ 120
  121 RWAARHYYYF LLLSLVRDLY EILLQMGQVA RDRAKREKSS RDPPKYSVAN EETEWLQSFL 180
  181 LLLFQSLKRH PPLLLDTVKN FCDILIPLNQ LGIYKSNLGV VGLGGLISSL AGLLTVVYPQ 240
  241 LKLKAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits