YRC Public Data Repository - Protein Structure Prediction

Protein:	BORG1_MOUSE
Organism:	Mus musculus
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BORG1_MOUSE.

Description	E-value	Query Range	Subject Range
BORG1_RAT - Cdc42 effector protein 2 OS=Rattus norvegicus GN=Cdc42ep2 PE=1 SV=1	294.0	[0..1]	[214..1]
gi\|114638550, gi... - gi\|114638552\|ref\|XP_508550.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114638...	286.0	[0..1]	[214..1]
gi\|61368017, gi\|... - gi\|61368017\|gb\|AAX43083.1\| CDC42 effector protein 2 [synthetic construct], gi\|54696868\|gb\|AAV38806.1...	285.0	[0..1]	[214..1]
CDC42EP2 - CDC42 effector protein (Rho GTPase binding) 2 gi\|123982225, gi... - gi\|61357837\|gb\|AAX41453.1\| CDC42 effector protein 2 [synthetic construct], gi\|208968301\|dbj\|BAG73989...	285.0	[0..1]	[214..1]
gi\|109105510, gi... - gi\|109105510\|ref\|XP_001113931.1\| PREDICTED: similar to Cdc42 effector protein 2 isoform 2 [Macaca mu...	282.0	[0..1]	[214..1]
gi\|57100381 - gi\|57100381\|ref\|XP_540865.1\| PREDICTED: similar to Cdc42 effector protein 2 [Canis familiaris]	281.0	[0..1]	[214..1]
BORG1_BOVIN - Cdc42 effector protein 2 OS=Bos taurus GN=CDC42EP2 PE=2 SV=1	266.0	[0..1]	[214..1]
BORG2_MOUSE - Cdc42 effector protein 3 OS=Mus musculus GN=Cdc42ep3 PE=1 SV=1	234.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKVPIYLK RGSRKGKKEK LRDLLSSDMI SPPLGDFRHT IHIGSGGGDD MFGDISFLQG  60
   61 KFHLLPGTAV EEAEEDGSFD LPFQFTRTTT VCGRELPDGL SPLLKNAISL PVIGGPQALT 120
  121 LPTAQAPPKP PRLHLESPQP SPQPSPQGAG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.638272
Match:	PF00786.19
Description:	No description for PF00786.19 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVDVWRIPEA GSPHNGMSPE PEAEEPFLSH ASSLLSLHVD LGPSILDDVL QIMDHDLGRV  60
   61 QIPT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits