YRC Public Data Repository - Protein Structure Prediction

Protein:	SPT4B_MOUSE
Organism:	Mus musculus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT4B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50758014 - gi\|50758014\|ref\|XP_415718.1\| PREDICTED: similar to hypothetical protein FLJ20315 [Gallus gallus]	227.0	[0..3]	[117..2120]
SPT4H_MACFA - Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1 gi\|167773609 - gi\|167773609\|gb\|ABZ92239.1\| suppressor of Ty 4 homolog 1 (S. cerevisiae) [synthetic construct] tr\|G1U0W2\|G1U0W2... - pep:novel chromosome:oryCun2:19:29917532:29924222:1 gene:ENSOCUG00000025823 transcript:ENSOCUT000000... ENSCJAT00000033815 - null SUPT4H1 - suppressor of Ty 4 homolog 1 (S. cerevisiae) gi\|73966584 - gi\|73966584\|ref\|XP_853156.1\| PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 i... gi\|205361137, gi... - gi\|62656744\|ref\|XP_213415.3\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensi... SPT4H_BOVIN - Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1 gi\|109114496 - gi\|109114496\|ref\|XP_001106749.1\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB s... gi\|114669547, gi... - gi\|114669549\|ref\|XP_001172699.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... SPT4A_MOUSE - Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1 gi\|149723988 - gi\|149723988\|ref\|XP_001503750.1\| PREDICTED: similar to suppressor of Ty 4 homolog 1 [Equus caballus]	224.0	[0..1]	[117..1]
SPT4H_PONPY - Transcription elongation factor SPT4 - Pongo pygmaeus (Orangutan) SPT4H_PONAB - Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1	224.0	[0..1]	[117..1]
gi\|74204382 - gi\|74204382\|dbj\|BAE39944.1\| unnamed protein product [Mus musculus]	223.0	[0..1]	[117..1]
SPT4H_XENLA - Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1	223.0	[0..1]	[117..1]
gi\|47223757 - gi\|47223757\|emb\|CAF98527.1\| unnamed protein product [Tetraodon nigroviridis]	222.0	[0..1]	[117..1]
gi\|62859879 - gi\|62859879\|ref\|NP_001016679.1\| suppressor of Ty 4 homolog 1 [Xenopus (Silurana) tropicalis]	222.0	[0..1]	[117..1]
SPT4H_DANRE - Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1	221.0	[0..1]	[117..1]
AGAP005428-PA - transcription elongation factor SPT4 1\|protein_coding\|2L:15423128:15423703:-1\|gene:AGAP005428 gi\|31212981, gi\|... - gi\|31212981\|ref\|XP_315434.1\| AGAP005428-PA [Anopheles gambiae str. PEST], gi\|21299793\|gb\|EAA11938.1\|...	209.0	[0..1]	[114..1]
gi\|157113677, gi... - gi\|157113677\|ref\|XP_001652051.1\| suppressor of ty [Aedes aegypti], gi\|108877633\|gb\|EAT41858.1\| suppr...	205.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALETVPKDL RHLRACLLCS LVKTIDQFEY DGCDNCDAYL QMKGNREMVY DCTSSSFDGI  60
   61 NAMMSPEDSW VSKWQRVSNF KPGVYAVSVT GRLPQGIVRE LKSRGVAYKS RDTAIKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2exuA
Description:	No description for 2exuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits