YRC Public Data Repository - Protein Structure Prediction

Protein:	PRAF1_MOUSE
Organism:	Mus musculus
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRAF1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|60834043 - gi\|60834043\|gb\|AAX37076.1\| Rab acceptor 1 [synthetic construct]	230.0	[0..1]	[185..1]
gi\|5453960, gi\|4... - gi\|5453960\|ref\|NP_006414.1\| Rab acceptor 1 [Homo sapiens], gi\|4877285\|emb\|CAB43107.1\| prenylated Rab...	229.0	[0..1]	[185..1]
PRAF1_RAT - Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1 PE=1 SV=1	227.0	[0..1]	[185..1]
gi\|109124936 - gi\|109124936\|ref\|XP_001104030.1\| PREDICTED: Rab acceptor 1 (prenylated) isoform 2 [Macaca mulatta]	226.0	[0..1]	[185..1]
PRAF1_PIG - Prenylated Rab acceptor protein 1 OS=Sus scrofa GN=RABAC1 PE=2 SV=1	226.0	[0..1]	[185..1]
gi\|114677497 - gi\|114677497\|ref\|XP_001152812.1\| PREDICTED: similar to prenylated rab acceptor 1 [Pan troglodytes]	225.0	[0..1]	[185..1]
PRAF1_CANLF - Prenylated Rab acceptor protein 1 OS=Canis lupus familiaris GN=RABAC1 PE=2 SV=1	222.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQKDQQKD AEGEGLSATT LLPKLIPSGA GREWLERRRA TIRPWGTFVD QQRFSRPRNV  60
   61 GELCQRLVRN VEYYQSNYVF VFLGLILYCV VTSPMLLVAL AVFFGACYIL YLRTLQSKLV 120
  121 LFGREVSPAH QYALAGGVSF PFFWLAGAGS AVFWVLGATL VLIGSHAAFH QMEPADGEEL 180
  181 QMEPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.086186
Match:	PF03208.10
Description:	No description for PF03208.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits