YRC Public Data Repository - Protein Structure Prediction

Protein:	CRBB1_MOUSE
Organism:	Mus musculus
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRBB1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|9739217 - gi\|9739217\|gb\|AAF97950.1\|AF286652_1 betaB1-crystallin [Rattus norvegicus]	360.0	[0..6]	[250..1]
gi\|22137737 - gi\|22137737\|gb\|AAH29012.1\| Crybb1 protein [Mus musculus]	344.0	[0..1]	[250..1]
gi\|73995382 - gi\|73995382\|ref\|XP_543459.2\| PREDICTED: similar to crystallin, beta B1 [Canis familiaris]	340.0	[0..1]	[250..1]
gi\|55660929 - gi\|55660929\|ref\|XP_515047.1\| PREDICTED: crystallin, beta B1 isoform 2 [Pan troglodytes]	337.0	[0..13]	[250..15]
gi\|60654535 - gi\|60654535\|gb\|AAX29958.1\| crystallin beta B1 [synthetic construct]	337.0	[0..13]	[250..15]
gi\|109451690, gi... - gi\|61364293\|gb\|AAX42520.1\| crystallin beta B1 [synthetic construct], gi\|109451690\|emb\|CAK54716.1\| CR... HGNC:2397\|MIM:60... - beta B1 CRYBB1 - crystallin, beta B1	336.0	[0..13]	[250..15]
CRBB1_PIG - Beta-crystallin B1 OS=Sus scrofa GN=CRYBB1 PE=2 SV=1	322.0	[0..1]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAAKASAT TAVNPGPDGK GKGAPSTGPA PAPGPTPVPA SVPRPAAKVG DLPPGSYRLI  60
   61 VFEQENFQGR RVEFSGECLN LGDRGFDRVR SLIVVSGPWV AFEQSAFRGE MFVLEKGEYP 120
  121 RWDTWTSSYR SDRLMSFRPI RMDSQEHKIC LFEGANFKGN TMEIQEDDVP SLWVYGFCDR 180
  181 VGSITVSGGT WVGYQYPGYR GYQYLLEPGD FRHWNEWGAF QPQMQAVRRL RDRQWHQEGC 240
  241 FPVLTAEPPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.69897
Match:	1okiA
Description:	Crystal structure of truncated human beta-B1-crystallin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of eye lens	3.95613127220698	bayes_pls_golite062009
binding	1.49962891213419	bayes_pls_golite062009
protein binding	0.439215717175215	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: