YRC Public Data Repository - Protein Structure Prediction

Protein:	LYNX_MOUSE, LYNX...
Organism:	Mus musculus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYNX_MOUSE, LYNX....

Description	E-value	Query Range	Subject Range
LYNX1_PANTR - Ly-6/neurotoxin-like protein 1 OS=Pan troglodytes GN=LYNX1 PE=3 SV=1	163.0	[0..1]	[116..1]
LYNX1 - Ly6/neurotoxin 1	162.0	[0..1]	[116..1]
LYNX1_MACMU, LYN... - (P61050) Ly-6/neurotoxin-like protein 1 precursor, Ly-6/neurotoxin-like protein 1 OS=Macaca mulatta ...	154.0	[0..1]	[116..1]
LYNX1_SAIBB - Ly-6/neurotoxin-like protein 1 OS=Saimiri boliviensis boliviensis GN=LYNX1 PE=3 SV=1 gi\|56122256 - gi\|56122256\|gb\|AAV74279.1\| Ly6/neurotoxin-1 [Saimiri boliviensis]	148.0	[0..1]	[116..1]
LYNX1_BOVIN - Ly-6/neurotoxin-like protein 1 OS=Bos taurus GN=LYNX1 PE=3 SV=1	128.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLLTVFLV ALMGLPVAQA LECHVCAYNG DNCFKPMRCP AMATYCMTTR TYFTPYRMKV  60
   61 RKSCVPSCFE TVYDGYSKHA SATSCCQYYL CNGAGFATPV TLALVPALLA TFWSLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.01
Match:	2j8bA
Description:	No description for 2j8bA was found.

Predicted functions:

Term	Confidence	Notes
signal transducer activity	1.79909561917824	bayes_pls_golite062009
molecular transducer activity	1.79909561917824	bayes_pls_golite062009
binding	1.52242458734052	bayes_pls_golite062009
receptor activity	1.15368277805736	bayes_pls_golite062009
protein binding	1.13333989498989	bayes_pls_golite062009
receptor binding	0.293497216160518	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: