YRC Public Data Repository - Protein Structure Prediction

Protein:	NPFF_MOUSE
Organism:	Mus musculus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPFF_MOUSE.

Description	E-value	Query Range	Subject Range
NPFF_RAT - Pro-FMRFamide-related neuropeptide FF OS=Rattus norvegicus GN=Npff PE=3 SV=1	186.0	[0..1]	[114..1]
gi\|76827457, gi\|... - gi\|76827457\|gb\|AAI07295.1\| Npff protein [Mus musculus], gi\|76825518\|gb\|AAI07296.1\| Npff protein [Mus...	145.0	[0..24]	[114..9]
NPFF - neuropeptide FF-amide peptide precursor	143.0	[0..1]	[114..1]
gi\|114644472 - gi\|114644472\|ref\|XP_001138078.1\| PREDICTED: neuropeptide FF-amide peptide isoform 1 [Pan troglodytes...	140.0	[0..1]	[114..1]
NPFF_BOVIN - Pro-FMRFamide-related neuropeptide FF OS=Bos taurus GN=NPFF PE=3 SV=1	140.0	[0..16]	[114..17]
gi\|109096952 - gi\|109096952\|ref\|XP_001106733.1\| PREDICTED: similar to neuropeptide FF-amide peptide precursor isofo...	137.0	[0..1]	[114..1]
gi\|114052450, gi... - gi\|116078056\|dbj\|BAF34891.1\| neuropeptide NPFF [Danio rerio], gi\|114052450\|ref\|NP_899189.2\| neuropep...	87.0	[0..58]	[114..66]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKWAALLL LLLLLLNWGH TEEAGSWGED QVFAGEDKGP HPPQYAHIPD RIQTPGSLFR  60
   61 VLLQAMDTPR RSPAFLFQPQ RFGRSAWGSW SKEQLNPQAR QFWSLAAPQR FGKK

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.629	a.46.1	Methionine synthase domain
View	Download	0.431	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.394	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.344	a.65.1	Annexin
View	Download	0.342	a.60.5	Barrier-to-autointegration factor, BAF

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits