YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5326868, gi\|1...
Organism:	Mus musculus
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5326868, gi|1....

Description	E-value	Query Range	Subject Range
gi\|109458852, gi... - gi\|109462078\|ref\|XP_001057369.1\| PREDICTED: similar to GSK-3 binding protein FRAT1 [Rattus norvegicu...	373.0	[0..1]	[257..1]
FRAT1_MOUSE - Proto-oncogene FRAT1 OS=Mus musculus GN=Frat1 PE=1 SV=2	351.0	[0..1]	[269..1]
gi\|4762025 - gi\|4762025\|gb\|AAB97096.2\| proto-oncogene [Homo sapiens]	330.0	[0..1]	[255..1]
gi\|55634427 - gi\|55634427\|ref\|XP_521571.1\| PREDICTED: GSK-3 binding protein FRAT1 [Pan troglodytes]	327.0	[0..1]	[255..1]
gi\|60654377 - gi\|60654377\|gb\|AAX29879.1\| frequently rearranged in advanced T-cell lymphomas [synthetic construct]	327.0	[0..1]	[255..1]
gi\|109090121 - gi\|109090121\|ref\|XP_001101995.1\| PREDICTED: similar to GSK-3 binding protein FRAT1 [Macaca mulatta]	321.0	[0..1]	[255..1]
gi\|76681648 - gi\|76681648\|ref\|XP_581986.2\| PREDICTED: similar to GSK-3 binding protein FRAT1, partial [Bos taurus]	301.0	[0..1]	[266..79]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCRREEEAG DEAEGEEDDN SFLLLQQSVT LGGSADVDRL IAQIGETLQL DARHDGPASP  60
   61 CAAPGPPPAP PRVLAALPAD KAGAPARRLL RRAASAEAGD PAPPGAVRCV LGERGRLRGR 120
  121 AAPYCVAEIA PGASALPQQL GLEVSPGMGK VSIPQPLSGR CRRGWLRN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [169-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAASRRQQQR RGSQSETRTS DGDPPRLLQQ LLLSGNLIKE AVRRLHSRGL QLQAKLPAHS  60
   61 FLGPLSAPVH EPPLPGSPRA ACSDPGDCDG GHSSELGTTF LSLAANNPGG HSTNL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits